Commit c0f66042 authored by Laura Denies's avatar Laura Denies
Browse files

adjusted ORFs ID translation

parent 01b6b60d
...@@ -11,7 +11,7 @@ rule combine_AMR_plasmid: ...@@ -11,7 +11,7 @@ rule combine_AMR_plasmid:
input: input:
AMR="{datadir}/{project}/AMR/deepARG_results/{sample}.out.mapping.ARG", AMR="{datadir}/{project}/AMR/deepARG_results/{sample}.out.mapping.ARG",
AMR_translation="{datadir}/{project}/renamed/{sample}_translation.tsv", AMR_translation="{datadir}/{project}/renamed/{sample}_translation.tsv",
Plasmid="{datadir}/{project}/MGE/PlasFlow/plasmid/{sample}_plasflow_prediction_final.tsv", Plasmid="{datadir}/{project}/MGE/plasmid/PlasFlow/{sample}_plasflow_prediction_final.tsv",
Contig_translation="{datadir}/{project}/renamed/{sample}_Contig_translation.tsv", Contig_translation="{datadir}/{project}/renamed/{sample}_Contig_translation.tsv",
Contig_gene_list="{datadir}/{project}/Prodigal/{sample}.contig", Contig_gene_list="{datadir}/{project}/Prodigal/{sample}.contig",
VirFinder="{datadir}/{project}/MGE/phage/{sample}_VirFinder_aggregated.csv", VirFinder="{datadir}/{project}/MGE/phage/{sample}_VirFinder_aggregated.csv",
......
...@@ -66,7 +66,7 @@ rule generate_ID: ...@@ -66,7 +66,7 @@ rule generate_ID:
rule generate_translation: rule generate_translation:
input: input:
renamed="{datadir}/{project}/renamed/{sample}_ID.faa", renamed="{datadir}/{project}/renamed/{sample}_ID.faa",
original="{datadir}/{sample}.faa" original="{datadir}/{project}/Prodigal/{sample}.faa"
output: output:
"{datadir}/{project}/renamed/{sample}_translation.tsv" "{datadir}/{project}/renamed/{sample}_translation.tsv"
message: message:
......
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