adjusted ORFs ID translation

rules/AMR/Combine_MGE_AMR.smk

@@ -11,7 +11,7 @@ rule combine_AMR_plasmid:
     input:
         AMR="{datadir}/{project}/AMR/deepARG_results/{sample}.out.mapping.ARG",
         AMR_translation="{datadir}/{project}/renamed/{sample}_translation.tsv",
-        Plasmid="{datadir}/{project}/MGE/PlasFlow/plasmid/{sample}_plasflow_prediction_final.tsv",
+        Plasmid="{datadir}/{project}/MGE/plasmid/PlasFlow/{sample}_plasflow_prediction_final.tsv",
         Contig_translation="{datadir}/{project}/renamed/{sample}_Contig_translation.tsv",
         Contig_gene_list="{datadir}/{project}/Prodigal/{sample}.contig",
         VirFinder="{datadir}/{project}/MGE/phage/{sample}_VirFinder_aggregated.csv",

rules/Universal/Preprocessing.smk

@@ -66,7 +66,7 @@ rule generate_ID:
 rule generate_translation:
     input:
         renamed="{datadir}/{project}/renamed/{sample}_ID.faa",
-        original="{datadir}/{sample}.faa"
+        original="{datadir}/{project}/Prodigal/{sample}.faa"
     output:
         "{datadir}/{project}/renamed/{sample}_translation.tsv"
     message: