Commit ac53f379 authored by Valentina Galata's avatar Valentina Galata
Browse files

updated PlasFlow YAML (issue #20)

parent 78baf4ff
name: Plasmid
channels: channels:
- jjhelmus # for PlasFlow
- bioconda/label/cf201901 - smaegol
- conda-forge # rest
- bioconda - bioconda
- conda-forge
- defaults - defaults
dependencies: dependencies:
- _libgcc_mutex=0.1=main - _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_llvm
- _r-mutex=1.0.1=anacondar_1 - _r-mutex=1.0.1=anacondar_1
- absl-py=0.5.0=py_0 - backports=1.0=py_2
- astor=0.7.1=py_0 - backports.weakref=1.0rc1=py35_1
- bioconductor-biocgenerics=0.26.0=r341_0 - bioconductor-biocgenerics=0.22.0=r3.3.2_0
- bioconductor-biostrings=2.48.0=r341h470a237_0 - bioconductor-biostrings=2.42.1=r3.3.2_0
- bioconductor-iranges=2.14.12=r341h470a237_0 - bioconductor-iranges=2.8.2=r3.3.2_0
- bioconductor-s4vectors=0.18.3=r341h470a237_0 - bioconductor-s4vectors=0.12.2=r3.3.2_0
- bioconductor-xvector=0.20.0=r341h470a237_0 - bioconductor-xvector=0.14.1=r3.3.2_0
- bioconductor-zlibbioc=1.26.0=r341h470a237_0 - bioconductor-zlibbioc=1.20.0=r3.3.2_1
- biopython=1.72=py35_0 - biopython=1.68=py35_0
- blas=2.12=openblas - blas=2.16=openblas
- bzip2=1.0.8=h516909a_0 - bleach=1.5.0=py35_0
- c-ares=1.15.0=h516909a_1001 - bzip2=1.0.8=h516909a_2
- ca-certificates=2019.6.16=hecc5488_0 - ca-certificates=2020.4.5.1=hecc5488_0
- cairo=1.14.12=h80bd089_1005 - cairo=1.14.6=4
- certifi=2018.8.24=py35_1001 - certifi=2018.8.24=py35_1001
- curl=7.61.0=h93b3f91_2 - curl=7.52.1=0
- fontconfig=2.13.1=he4413a7_1000 - fontconfig=2.12.1=6
- freetype=2.10.0=he983fc9_1 - freetype=2.7=1
- gast=0.2.2=py_0
- gettext=0.19.8.1=hc5be6a0_1002 - gettext=0.19.8.1=hc5be6a0_1002
- glib=2.56.2=had28632_1001 - glib=2.51.4=0
- graphite2=1.3.13=hf484d3e_1000 - graphite2=1.3.13=he1b5a44_1001
- grpcio=1.14.1=py35hd60e7a3_0 - gsl=2.6=h294904e_0
- gsl=2.2.1=h0c605f7_3 - harfbuzz=1.4.3=0
- harfbuzz=1.9.0=he243708_1001 - html5lib=0.9999999=py35_0
- icu=58.2=hf484d3e_1000 - icu=58.2=hf484d3e_1000
- jpeg=9c=h14c3975_1001 - jpeg=9c=h14c3975_1001
- krb5=1.14.6=0 - libblas=3.8.0=16_openblas
- libblas=3.8.0=12_openblas - libcblas=3.8.0=16_openblas
- libcblas=3.8.0=12_openblas - libffi=3.2.1=he1b5a44_1007
- libffi=3.2.1=he1b5a44_1006
- libgcc=7.2.0=h69d50b8_2 - libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.1.0=hdf63c60_0 - libgcc-ng=9.2.0=h24d8f2e_2
- libgfortran=3.0.0=1 - libgfortran-ng=7.3.0=hdf63c60_5
- libgfortran-ng=7.3.0=hdf63c60_0 - libiconv=1.15=h516909a_1006
- libiconv=1.15=h516909a_1005 - liblapack=3.8.0=16_openblas
- liblapack=3.8.0=12_openblas - liblapacke=3.8.0=16_openblas
- liblapacke=3.8.0=12_openblas - libopenblas=0.3.9=h5ec1e0e_0
- libopenblas=0.3.7=h6e990d7_1 - libpng=1.6.28=1
- libpng=1.6.37=hed695b0_0 - libstdcxx-ng=9.2.0=hdf63c60_2
- libprotobuf=3.6.0=hdbcaa40_1000 - libtiff=4.0.7=0
- libssh2=1.8.0=h1ad7b7a_1003 - libxml2=2.9.5=0
- libstdcxx-ng=9.1.0=hdf63c60_0 - llvm-openmp=10.0.0=hc9558a2_0
- libtiff=4.0.10=h57b8799_1003 - markdown=3.2.1=py_0
- libuuid=2.32.1=h14c3975_1000 - mmtf-python=1.0.2=py35_0
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=h13577e0_2
- lz4-c=1.8.3=he1b5a44_1001
- markdown=3.1.1=py_0
- mock=2.0.0=py35_0 - mock=2.0.0=py35_0
- ncurses=6.1=hf484d3e_1002 - msgpack-python=0.5.6=py35h2d50403_3
- ncurses=5.9=10
- numpy=1.15.2=py35h99e49ec_0 - numpy=1.15.2=py35h99e49ec_0
- numpy-base=1.15.2=py35h2f8d375_0 - numpy-base=1.15.2=py35h2f8d375_0
- openssl=1.0.2r=h14c3975_0 - olefile=0.46=py_0
- openssl=1.0.2u=h516909a_0
- pandas=0.23.4=py35hf8a1672_0 - pandas=0.23.4=py35hf8a1672_0
- pango=1.40.14=hf0c64fd_1003 - pango=1.40.4=0
- pbr=5.4.2=py_0 - pbr=5.4.2=py_0
- pcre=8.41=hf484d3e_1003 - pcre=8.44=he1b5a44_0
- perl=5.26.2=h516909a_1006 - pillow=4.3.0=py35_0
- perl-bioperl=1.6.924=4 - pip=20.0.2=py_2
- perl-getopt-long=2.50=pl526_1
- perl-threaded=5.26.0=0
- perl-yaml=1.29=pl526_0
- pip=18.0=py35_1001
- pixman=0.34.0=h14c3975_1003 - pixman=0.34.0=h14c3975_1003
- protobuf=3.0.0b2=py35_1 - protobuf=3.4.0=py35_0
- pthread-stubs=0.4=h14c3975_1001 - python=3.5.4=0
- python=3.5.5=h5001a0f_2 - python-dateutil=2.8.1=py_0
- python-dateutil=2.8.0=py_0 - pytz=2019.3=py_0
- pytz=2019.2=py_0 - r-base=3.3.2=5
- r-base=3.4.1=h4fe35fd_8 - readline=6.2=0
- readline=7.0=hf8c457e_1001 - reportlab=3.4.0=py35_0
- rpy2=2.8.5=py35r3.4.1_0 - rpy2=2.7.8=py35r3.3.2_1
- scikit-learn=0.20.0=py35h22eb022_1 - scikit-learn=0.20.0=py35h22eb022_1
- scipy=1.1.0=py35he2b7bc3_1 - scipy=1.1.0=py35he2b7bc3_1
- setuptools=40.4.3=py35_0 - setuptools=40.4.3=py35_0
- six=1.11.0=py35_1 - six=1.14.0=py_1
- sqlite=3.28.0=h8b20d00_0 - sqlite=3.13.0=1
- tensorflow=0.10.0rc0=py35_1 - tensorflow=1.3.0=py35_0
- termcolor=1.1.0=py_2 - tk=8.5.19=2
- tk=8.6.9=hed695b0_1002 - webencodings=0.5.1=py_1
- werkzeug=0.15.5=py_0 - werkzeug=1.0.1=pyh9f0ad1d_0
- wheel=0.32.0=py35_1000 - wheel=0.34.2=py_1
- xorg-kbproto=1.0.7=h14c3975_1002 - xz=5.2.5=h516909a_0
- xorg-libice=1.0.10=h516909a_0 - zlib=1.2.8=3
- xorg-libsm=1.2.3=h84519dc_1000 # PlasFlow: should be installed from smaegol, NOT from pip
- xorg-libx11=1.6.8=h516909a_0 - plasflow=1.1.0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-libxt=1.2.0=h516909a_0
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- zlib=1.2.11=h516909a_1005
- zstd=1.4.0=h3b9ef0a_0
- pip:
- plasflow==1.1.0
prefix: /home/users/ldenies/apps/miniconda3/envs/PlasFlow
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