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Laura Denies
PathoFact
Commits
ac53f379
Commit
ac53f379
authored
Apr 21, 2020
by
Valentina Galata
Browse files
updated PlasFlow YAML (issue
#20
)
parent
78baf4ff
Changes
1
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envs/PlasFlow.yaml
View file @
ac53f379
name
:
Plasmid
channels
:
-
jjhelmus
-
bioconda/label/cf201901
-
conda-forge
# for PlasFlow
-
smaegol
# rest
-
bioconda
-
conda-forge
-
defaults
dependencies
:
-
_libgcc_mutex=0.1=main
-
_libgcc_mutex=0.1=conda_forge
-
_openmp_mutex=4.5=1_llvm
-
_r-mutex=1.0.1=anacondar_1
-
absl-py=0.5
.0=py_
0
-
astor=0.7.1=py_0
-
bioconductor-biocgenerics=0.2
6
.0=r3
41
_0
-
bioconductor-biostrings=2.4
8.0=r341h470a237
_0
-
bioconductor-iranges=2.
14.12=r341h470a237
_0
-
bioconductor-s4vectors=0.1
8.3=r341h470a237
_0
-
bioconductor-xvector=0.
20.0=r341h470a237
_0
-
bioconductor-zlibbioc=1.2
6
.0=r3
41h470a237_0
-
biopython=1.
72
=py35_0
-
blas=2.1
2
=openblas
-
b
zip2=1.0.8=h516909a
_0
-
c-ares=1.15.0
=h516909a_
1001
-
ca-certificates=20
19.6
.1
6
=hecc5488_0
-
cairo=1.14.
12=h80bd089_1005
-
backports=1
.0=py_
2
-
backports.weakref=1.0rc1=py35_1
-
bioconductor-biocgenerics=0.2
2
.0=r3
.3.2
_0
-
bioconductor-biostrings=2.4
2.1=r3.3.2
_0
-
bioconductor-iranges=2.
8.2=r3.3.2
_0
-
bioconductor-s4vectors=0.1
2.2=r3.3.2
_0
-
bioconductor-xvector=0.
14.1=r3.3.2
_0
-
bioconductor-zlibbioc=1.2
0
.0=r3
.3.2_1
-
biopython=1.
68
=py35_0
-
blas=2.1
6
=openblas
-
b
leach=1.5.0=py35
_0
-
bzip2=1.0.8
=h516909a_
2
-
ca-certificates=20
20.4.5
.1=hecc5488_0
-
cairo=1.14.
6=4
-
certifi=2018.8.24=py35_1001
-
curl=7.61.0=h93b3f91_2
-
fontconfig=2.13.1=he4413a7_1000
-
freetype=2.10.0=he983fc9_1
-
gast=0.2.2=py_0
-
curl=7.52.1=0
-
fontconfig=2.12.1=6
-
freetype=2.7=1
-
gettext=0.19.8.1=hc5be6a0_1002
-
glib=2.5
6.2=had28632_1001
-
graphite2=1.3.13=h
f484d3e
_100
0
-
g
rpcio=1.14.1=py35hd60e7a3
_0
-
gsl=2.2.1=h0c605f7_3
-
h
arfbuzz=1.9.0=he243708_1001
-
glib=2.5
1.4=0
-
graphite2=1.3.13=h
e1b5a44
_100
1
-
g
sl=2.6=h294904e
_0
-
harfbuzz=1.4.3=0
-
h
tml5lib=0.9999999=py35_0
-
icu=58.2=hf484d3e_1000
-
jpeg=9c=h14c3975_1001
-
krb5=1.14.6=0
-
libblas=3.8.0=12_openblas
-
libcblas=3.8.0=12_openblas
-
libffi=3.2.1=he1b5a44_1006
-
libblas=3.8.0=16_openblas
-
libcblas=3.8.0=16_openblas
-
libffi=3.2.1=he1b5a44_1007
-
libgcc=7.2.0=h69d50b8_2
-
libgcc-ng=9.1.0=hdf63c60_0
-
libgfortran=3.0.0=1
-
libgfortran-ng=7.3.0=hdf63c60_0
-
libiconv=1.15=h516909a_1005
-
liblapack=3.8.0=12_openblas
-
liblapacke=3.8.0=12_openblas
-
libopenblas=0.3.7=h6e990d7_1
-
libpng=1.6.37=hed695b0_0
-
libprotobuf=3.6.0=hdbcaa40_1000
-
libssh2=1.8.0=h1ad7b7a_1003
-
libstdcxx-ng=9.1.0=hdf63c60_0
-
libtiff=4.0.10=h57b8799_1003
-
libuuid=2.32.1=h14c3975_1000
-
libxcb=1.13=h14c3975_1002
-
libxml2=2.9.9=h13577e0_2
-
lz4-c=1.8.3=he1b5a44_1001
-
markdown=3.1.1=py_0
-
libgcc-ng=9.2.0=h24d8f2e_2
-
libgfortran-ng=7.3.0=hdf63c60_5
-
libiconv=1.15=h516909a_1006
-
liblapack=3.8.0=16_openblas
-
liblapacke=3.8.0=16_openblas
-
libopenblas=0.3.9=h5ec1e0e_0
-
libpng=1.6.28=1
-
libstdcxx-ng=9.2.0=hdf63c60_2
-
libtiff=4.0.7=0
-
libxml2=2.9.5=0
-
llvm-openmp=10.0.0=hc9558a2_0
-
markdown=3.2.1=py_0
-
mmtf-python=1.0.2=py35_0
-
mock=2.0.0=py35_0
-
ncurses=6.1=hf484d3e_1002
-
msgpack-python=0.5.6=py35h2d50403_3
-
ncurses=5.9=10
-
numpy=1.15.2=py35h99e49ec_0
-
numpy-base=1.15.2=py35h2f8d375_0
-
openssl=1.0.2r=h14c3975_0
-
olefile=0.46=py_0
-
openssl=1.0.2u=h516909a_0
-
pandas=0.23.4=py35hf8a1672_0
-
pango=1.40.
1
4=
hf0c64fd_1003
-
pango=1.40.4=
0
-
pbr=5.4.2=py_0
-
pcre=8.41=hf484d3e_1003
-
perl=5.26.2=h516909a_1006
-
perl-bioperl=1.6.924=4
-
perl-getopt-long=2.50=pl526_1
-
perl-threaded=5.26.0=0
-
perl-yaml=1.29=pl526_0
-
pip=18.0=py35_1001
-
pcre=8.44=he1b5a44_0
-
pillow=4.3.0=py35_0
-
pip=20.0.2=py_2
-
pixman=0.34.0=h14c3975_1003
-
protobuf=3.
0
.0
b2
=py35_
1
-
pth
read-stubs=0.4=h14c3975_1001
-
python
=3.5.5=h5001a0f_2
-
pyt
hon-dateutil=2.8.0
=py_0
-
pytz=2019.2=py_0
-
r
-base=3.4.1=h4fe35fd_8
-
re
adline=7.0=hf8c457e_1001
-
rpy2=2.
8.5
=py35r3.
4.1_0
-
protobuf=3.
4
.0=py35_
0
-
p
y
th
on=3.5.4=0
-
python
-dateutil=2.8.1=py_0
-
pyt
z=2019.3
=py_0
-
r-base=3.3.2=5
-
r
eadline=6.2=0
-
re
portlab=3.4.0=py35_0
-
rpy2=2.
7.8
=py35r3.
3.2_1
-
scikit-learn=0.20.0=py35h22eb022_1
-
scipy=1.1.0=py35he2b7bc3_1
-
setuptools=40.4.3=py35_0
-
six=1.11.0=py35_1
-
sqlite=3.28.0=h8b20d00_0
-
tensorflow=0.10.0rc0=py35_1
-
termcolor=1.1.0=py_2
-
tk=8.6.9=hed695b0_1002
-
werkzeug=0.15.5=py_0
-
wheel=0.32.0=py35_1000
-
xorg-kbproto=1.0.7=h14c3975_1002
-
xorg-libice=1.0.10=h516909a_0
-
xorg-libsm=1.2.3=h84519dc_1000
-
xorg-libx11=1.6.8=h516909a_0
-
xorg-libxau=1.0.9=h14c3975_0
-
xorg-libxdmcp=1.1.3=h516909a_0
-
xorg-libxext=1.3.4=h516909a_0
-
xorg-libxrender=0.9.10=h516909a_1002
-
xorg-libxt=1.2.0=h516909a_0
-
xorg-renderproto=0.11.1=h14c3975_1002
-
xorg-xextproto=7.3.0=h14c3975_1002
-
xorg-xproto=7.0.31=h14c3975_1007
-
xz=5.2.4=h14c3975_1001
-
zlib=1.2.11=h516909a_1005
-
zstd=1.4.0=h3b9ef0a_0
-
pip
:
-
plasflow==1.1.0
prefix
:
/home/users/ldenies/apps/miniconda3/envs/PlasFlow
-
six=1.14.0=py_1
-
sqlite=3.13.0=1
-
tensorflow=1.3.0=py35_0
-
tk=8.5.19=2
-
webencodings=0.5.1=py_1
-
werkzeug=1.0.1=pyh9f0ad1d_0
-
wheel=0.34.2=py_1
-
xz=5.2.5=h516909a_0
-
zlib=1.2.8=3
# PlasFlow: should be installed from smaegol, NOT from pip
-
plasflow=1.1.0
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