Commit 85731b76 authored by Laura Denies's avatar Laura Denies
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Update README.md

parent 09e8c824
...@@ -44,7 +44,7 @@ All three input files used by the pipeline for one sample need to be given the s ...@@ -44,7 +44,7 @@ All three input files used by the pipeline for one sample need to be given the s
To run PathoFact the sample name is given in the config.yaml file at "input_file". If wanted more than one sample can be run at the simultanously, for example: To run PathoFact the sample name is given in the config.yaml file at "input_file". If wanted more than one sample can be run at the simultanously, for example:
* input_file: ["SAMPLE_A","SAMPLE_B"] * input_file: ["SAMPLE_A","SAMPLE_B"]
In "OUTDIR" the pathway to the samples are given and the PathoFact results are deposited in the same directory. In "OUTDIR" the pathway to the samples are given and the PathoFact results are deposited in the same directory.
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