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Commit 7c1e9fff authored by Laura Denies's avatar Laura Denies
Browse files

Update config.yaml

parent 2a407e88
pathofact: pathofact:
sample: ["test_sample"] # requires user input sample: ["sample"] # requires user input
project: Final_test # requires user input project: PathoFact_results # requires user input
datadir: /work/projects/ecosystem_biology/local_tools/PathoFact_update/test_dataset # requires user input datadir: /path/to/dataset # requires user input
workflow: "complete" workflow: "complete"
size_fasta: 10000 size_fasta: 10000
scripts: "scripts" scripts: "scripts"
signalp: "/work/projects/ecosystem_biology/local_tools/SignalP/signalp-5.0b/bin" # requires user input signalp: "/path/to/signalp-5.0b/bin" # requires user input
deepvirfinder: "submodules/DeepVirFinder/dvf.py" deepvirfinder: "submodules/DeepVirFinder/dvf.py"
tox_hmm: "databases/toxins/combined_Toxin.hmm" tox_hmm: "databases/toxins/combined_Toxin.hmm"
tox_lib: "databases/library_HMM_Toxins.csv" tox_lib: "databases/library_HMM_Toxins.csv"
...@@ -19,5 +19,5 @@ pathofact: ...@@ -19,5 +19,5 @@ pathofact:
long: "02:00:00" long: "02:00:00"
mem: mem:
normal_mem_per_core_gb: "4G" normal_mem_per_core_gb: "4G"
big_mem_cores: 8 big_mem_cores: 4
big_mem_per_core_gb: "30G" big_mem_per_core_gb: "30G"
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