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Laura Denies
PathoFact
Commits
78baf4ff
Commit
78baf4ff
authored
Apr 21, 2020
by
Valentina Galata
Browse files
added setup for DeepARG in set-up.sh (issue
#19
)
parent
8807fe5b
Changes
1
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set-up.sh
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78baf4ff
...
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@@ -14,3 +14,14 @@ git clone https://github.com/simroux/VirSorter.git
cd
VirSorter/Scripts
make clean
make
###########
# DeepARG #
###########
# From installation instructions: https://bitbucket.org/gusphdproj/deeparg-ss/src/master/
# replace path in options.py
sed
-i
's@^path\s*=.*$@path = "'
$(
realpath
submodules/deeparg-ss
)
'"@'
submodules/deeparg-ss/options.py
# make DIAMOND binary executable
chmod
+x submodules/deeparg-ss/bin/diamond
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