failsafe empty files

72cf8aea · Laura Denies · d5d52d4a · 72cf8aea
Commit 72cf8aea authored Jul 21, 2020 by Laura Denies
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rules/AMR/Phage.smk rules/AMR/Phage.smk +2 -2

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--- a/rules/AMR/Phage.smk
+++ b/rules/AMR/Phage.smk
@@ -41,9 +41,9 @@ rule aggregate_VirSorter:
        """
        if [ -s {output} ]
        then
-            mv {input} {output}
+           cp scripts/virsorter_headers.csv {output}
        else
-            cp scripts/virsorter_headers.csv {output}
+            mv {input} {output}
        fi
        """