Commit 6af75675 authored by Valentina Galata's avatar Valentina Galata
Browse files

uncommented a cmd line in test/set-up.sh (issue #30)

parent b793818e
#!/bin/bash -l
# modify *.faa: rm record descriptions
#sed -i '/^>/ s/ .*//' test/test_sample.faa
sed -i '/^>/ s/ .*//' test/test_sample.faa
# *.gff to *.contig: contig ID, feature ID
sed -n '/^##gff/,/^##FASTA/p' test/test_sample.gff | grep -v '^#' | cut -f1,9 | cut -d';' -f1 | sed 's/ID=//' > test/test_sample.contig
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment