bug fix: wrong redirect into log file in rules/AMR/Plasmid.snk for filter.pl

67c3ab83 · Valentina Galata · 296e4e17 · 67c3ab83
Commit 67c3ab83 authored Apr 23, 2020 by Valentina Galata
--- a/rules/AMR/Plasmid.snk
+++ b/rules/AMR/Plasmid.snk
@@ -23,7 +23,7 @@ rule filter_seq:
    params:
        outdir="{OUTDIR}"
    shell:
-        "./scripts/filter.pl 1000 {input} > {output} &> {log}"
+        "./scripts/filter.pl 1000 {input} > {output} 2> {log}"

 checkpoint splitplasmid:
    input: