DeepVirFinder: changed path in config.yaml, deleted dir in scripts/, rm in set-up.sh (issue #17)

config.yaml

@@ -48,7 +48,7 @@ virsorter: "scripts/VirSorter/wrapper_phage_contigs_sorter_iPlant.pl"
 virsorter_data: "scripts/virsorter-data"
 
 #VirFinder
-DeepVirFinder: "scripts/DeepVirFinder/dvf.py"
+DeepVirFinder: "submodules/DeepVirFinder/dvf.py"
 
 
 

DeepVirFinder @ 475d883c

-Subproject commit 475d883c5849fb1e8054890ad0731a1cca97330d

set-up.sh

@@ -2,9 +2,9 @@
 
 cd scripts
 # remove possible empty folders at start
-rm -rf deeparg-ss DeepVirFinder VirSorter PlasFlow
+rm -rf deeparg-ss VirSorter PlasFlow
 # Install deepARG (https://bitbucket.org/gusphdproj/deeparg-ss/src/master/)
-git clone https://gaarangoa@bitbucket.org/gusphdproj/deeparg-ss.git
+#git clone https://gaarangoa@bitbucket.org/gusphdproj/deeparg-ss.git
 # Install PlasFlow (https://github.com/smaegol/PlasFlow)
 git clone https://github.com/smaegol/PlasFlow
 #Install DeepVirFinder (https://github.com/jessieren/DeepVirFinder)