Commit 616d46cd authored by Valentina Galata's avatar Valentina Galata
Browse files

DeepVirFinder: changed path in config.yaml, deleted dir in scripts/, rm in set-up.sh (issue #17)

parent b56f7fd0
......@@ -48,7 +48,7 @@ virsorter: "scripts/VirSorter/wrapper_phage_contigs_sorter_iPlant.pl"
virsorter_data: "scripts/virsorter-data"
#VirFinder
DeepVirFinder: "scripts/DeepVirFinder/dvf.py"
DeepVirFinder: "submodules/DeepVirFinder/dvf.py"
DeepVirFinder @ 475d883c
Subproject commit 475d883c5849fb1e8054890ad0731a1cca97330d
......@@ -2,9 +2,9 @@
cd scripts
# remove possible empty folders at start
rm -rf deeparg-ss DeepVirFinder VirSorter PlasFlow
rm -rf deeparg-ss VirSorter PlasFlow
# Install deepARG (https://bitbucket.org/gusphdproj/deeparg-ss/src/master/)
git clone https://gaarangoa@bitbucket.org/gusphdproj/deeparg-ss.git
#git clone https://gaarangoa@bitbucket.org/gusphdproj/deeparg-ss.git
# Install PlasFlow (https://github.com/smaegol/PlasFlow)
git clone https://github.com/smaegol/PlasFlow
#Install DeepVirFinder (https://github.com/jessieren/DeepVirFinder)
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment