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Commit 4280c029 authored by Laura Denies's avatar Laura Denies
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Update README.md

parent ce34c5c4
...@@ -67,7 +67,7 @@ After the installation, adjust the path for this tool in `config.yaml` and `test ...@@ -67,7 +67,7 @@ After the installation, adjust the path for this tool in `config.yaml` and `test
Each sample should have one input file: Each sample should have one input file:
- `*.fna`: FASTA file containing nucleotide sequences of the contigs - `*.fna`: FASTA file containing nucleotide sequences of the contigs
- no whitespaces in FASTA headers - no whitespaces in FASTA headers (i.e. to remove whitespaces: sed -i '/^>/ s/ .*//' file.fna)
- for prediction of mobile genetic elements and input for prodigal - for prediction of mobile genetic elements and input for prodigal
The following files are generated by PathoFact itself: The following files are generated by PathoFact itself:
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