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Commit 297c0a98 authored by Laura Denies's avatar Laura Denies
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Update README.md

parent 5d05b9d0
......@@ -69,11 +69,13 @@ After the installation, adjust the path for this tool in `config.yaml` (keyword
## Input files
Each sample should have three input files:
The following input file is needed for all samples:
- `*.fna`: FASTA file containing nucleotide sequences of the contigs
- no whitespaces in FASTA headers
- for prediction of mobile genetic elements
The following files are generated by PathoFact itself:
- `*.faa`: FASTA file conatining translated gene sequences, i.e. amino acid sequences
- no whitespaces in FASTA headers
- for prediction of toxins, virulence factors and antimicrobial resistance genes
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