added PathoFact.yaml (issue #16)

envs/PathoFact.yaml

+name: PathoFact
+channels:
+  - bioconda
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=1_llvm
+  - aioeasywebdav=2.4.0=py36_1000
+  - aiohttp=3.6.2=py36h516909a_0
+  - appdirs=1.4.3=py_1
+  - asn1crypto=1.3.0=py36_0
+  - async-timeout=3.0.1=py_1000
+  - attrs=19.3.0=py_0
+  - bcrypt=3.1.7=py36h8c4c3a4_1
+  - boto3=1.12.41=pyh9f0ad1d_0
+  - botocore=1.15.41=pyh9f0ad1d_0
+  - brotlipy=0.7.0=py36h8c4c3a4_1000
+  - bzip2=1.0.8=h516909a_2
+  - ca-certificates=2020.4.5.1=hecc5488_0
+  - cachetools=3.1.1=py_0
+  - cairo=1.16.0=hcf35c78_1003
+  - certifi=2020.4.5.1=py36h9f0ad1d_0
+  - cffi=1.14.0=py36hd463f26_0
+  - chardet=3.0.4=py36h9f0ad1d_1006
+  - configargparse=1.2.1=pyh9f0ad1d_0
+  - cryptography=2.5=py36hb7f436b_1
+  - datrie=0.8.2=py36h8c4c3a4_0
+  - decorator=4.4.2=py_0
+  - docutils=0.15.2=py36_0
+  - dropbox=9.4.0=py_0
+  - expat=2.2.9=he1b5a44_2
+  - fftw=3.3.8=mpi_mpich_h3f9e1be_1010
+  - filechunkio=1.8=py_2
+  - fontconfig=2.13.1=h86ecdb6_1001
+  - freetype=2.10.1=he06d7ca_0
+  - ftputil=3.4=py_0
+  - gdk-pixbuf=2.36.12=h3f25603_1005
+  - gettext=0.19.8.1=hc5be6a0_1002
+  - ghostscript=9.22=hf484d3e_1001
+  - giflib=5.1.7=h516909a_1
+  - gitdb=4.0.4=py_0
+  - gitpython=3.1.1=py_0
+  - glib=2.64.2=h6f030ca_0
+  - gobject-introspection=1.58.2=py36h6d43c07_1004
+  - google-api-core=1.17.0=py36h9f0ad1d_0
+  - google-auth=1.14.0=pyh9f0ad1d_0
+  - google-cloud-core=1.3.0=py_0
+  - google-cloud-storage=1.27.0=pyh9f0ad1d_0
+  - google-resumable-media=0.5.0=py_1
+  - googleapis-common-protos=1.51.0=py36h9f0ad1d_2
+  - graphite2=1.3.13=he1b5a44_1001
+  - graphviz=2.38.0=hf68f40c_1011
+  - harfbuzz=2.4.0=h9f30f68_3
+  - icu=64.2=he1b5a44_1
+  - idna=2.9=py_1
+  - idna_ssl=1.1.0=py36_1000
+  - imagemagick=7.0.8_54=pl526h39023e4_0
+  - importlib-metadata=1.6.0=py36h9f0ad1d_0
+  - importlib_metadata=1.6.0=0
+  - jbig=2.1=h516909a_2002
+  - jinja2=2.11.2=pyh9f0ad1d_0
+  - jmespath=0.9.5=py_0
+  - jpeg=9c=h14c3975_1001
+  - jsonschema=3.2.0=py36h9f0ad1d_1
+  - libblas=3.8.0=16_openblas
+  - libcblas=3.8.0=16_openblas
+  - libcroco=0.6.13=h8d621e5_1
+  - libffi=3.2.1=he1b5a44_1007
+  - libgcc-ng=9.2.0=h24d8f2e_2
+  - libgfortran-ng=7.3.0=hdf63c60_5
+  - libiconv=1.15=h516909a_1006
+  - liblapack=3.8.0=16_openblas
+  - libopenblas=0.3.9=h5ec1e0e_0
+  - libpng=1.6.37=hed695b0_1
+  - libprotobuf=3.11.4=h8b12597_0
+  - librsvg=2.44.14=h11c8777_0
+  - libstdcxx-ng=9.2.0=hdf63c60_2
+  - libtiff=4.1.0=hc3755c2_3
+  - libtool=2.4.6=h14c3975_1002
+  - libuuid=2.32.1=h14c3975_1000
+  - libwebp=1.0.2=hf4e8a37_4
+  - libxcb=1.13=h14c3975_1002
+  - libxml2=2.9.10=hee79883_0
+  - llvm-openmp=10.0.0=hc9558a2_0
+  - lz4-c=1.9.2=he1b5a44_0
+  - markupsafe=1.1.1=py36h8c4c3a4_1
+  - mpi=1.0=mpich
+  - mpich=3.3.2=hc856adb_0
+  - multidict=4.7.5=py36h516909a_0
+  - ncurses=5.9=10
+  - networkx=2.4=py_1
+  - numpy=1.18.1=py36h7314795_1
+  - openjpeg=2.3.1=h981e76c_3
+  - openssl=1.0.2u=h516909a_0
+  - pandas=1.0.3=py36h830a2c2_1
+  - pango=1.40.14=he7ab937_1005
+  - paramiko=2.7.1=py36_0
+  - pcre=8.44=he1b5a44_0
+  - perl=5.26.2=h516909a_1006
+  - pip=20.0.2=py_2
+  - pixman=0.38.0=h516909a_1003
+  - pkg-config=0.29.2=h516909a_1006
+  - prettytable=0.7.2=py_3
+  - protobuf=3.11.4=py36h831f99a_1
+  - psutil=5.7.0=py36h8c4c3a4_1
+  - pthread-stubs=0.4=h14c3975_1001
+  - pyasn1=0.4.8=py_0
+  - pyasn1-modules=0.2.7=py_0
+  - pycparser=2.20=py_0
+  - pygments=2.6.1=py_0
+  - pygraphviz=1.5=py36h8c4c3a4_1002
+  - pynacl=1.3.0=py36h516909a_1001
+  - pyopenssl=19.0.0=py36_0
+  - pyrsistent=0.16.0=py36h8c4c3a4_0
+  - pysftp=0.2.9=py_1
+  - pysocks=1.7.1=py36h9f0ad1d_1
+  - python=3.6.4=0
+  - python-dateutil=2.8.1=py_0
+  - python-irodsclient=0.8.2=py_0
+  - python_abi=3.6=1_cp36m
+  - pytz=2019.3=py_0
+  - pyyaml=5.3.1=py36h8c4c3a4_0
+  - ratelimiter=1.2.0=py36_1000
+  - readline=7.0=0
+  - requests=2.23.0=pyh8c360ce_2
+  - rsa=4.0=py_0
+  - s3transfer=0.3.3=py36h9f0ad1d_1
+  - setuptools=46.1.3=py36h9f0ad1d_0
+  - six=1.14.0=py_1
+  - smmap=3.0.2=pyh9f0ad1d_0
+  - snakemake=5.5.4=2
+  - snakemake-minimal=5.5.4=py_2
+  - sqlite=3.20.1=2
+  - tk=8.6.10=hed695b0_0
+  - typing_extensions=3.7.4.1=py36h9f0ad1d_3
+  - urllib3=1.25.9=py_0
+  - wheel=0.34.2=py_1
+  - wrapt=1.12.1=py36h8c4c3a4_1
+  - xmlrunner=1.7.7=py_0
+  - xorg-kbproto=1.0.7=h14c3975_1002
+  - xorg-libice=1.0.10=h516909a_0
+  - xorg-libsm=1.2.3=h84519dc_1000
+  - xorg-libx11=1.6.9=h516909a_0
+  - xorg-libxau=1.0.9=h14c3975_0
+  - xorg-libxdmcp=1.1.3=h516909a_0
+  - xorg-libxext=1.3.4=h516909a_0
+  - xorg-libxpm=3.5.13=h516909a_0
+  - xorg-libxrender=0.9.10=h516909a_1002
+  - xorg-libxt=1.1.5=h516909a_1003
+  - xorg-renderproto=0.11.1=h14c3975_1002
+  - xorg-xextproto=7.3.0=h14c3975_1002
+  - xorg-xproto=7.0.31=h14c3975_1007
+  - xz=5.2.5=h516909a_0
+  - yaml=0.2.4=h516909a_0
+  - yarl=1.3.0=py36h516909a_1000
+  - zipp=3.1.0=py_0
+  - zlib=1.2.11=h516909a_1006
+  - zstd=1.4.4=h6597ccf_3