Gitlab is now using https://gitlab.lcsb.uni.lu as it's primary address. Please update your bookmarks. FAQ.

Commit 13fdb55a authored by Laura Denies's avatar Laura Denies
Browse files

Update README.md

parent 4a26f7f5
...@@ -8,7 +8,7 @@ Furthermore, each module (toxins, virulence factors, and antimicrobial resistanc ...@@ -8,7 +8,7 @@ Furthermore, each module (toxins, virulence factors, and antimicrobial resistanc
# Requirements and installation # Requirements and installation
The main requirements are: The main requirements are:
- `gcc/g++`
- `git` and `git lfs` - `git` and `git lfs`
- `conda` - `conda`
...@@ -33,7 +33,7 @@ Clone the repository and its sub-modules: ...@@ -33,7 +33,7 @@ Clone the repository and its sub-modules:
# activate git lfs # activate git lfs
git lfs install git lfs install
# clone branch incl. sub-modules # clone branch incl. sub-modules
git clone -b PathoFact_updates --recursive https://git-r3lab.uni.lu/laura.denies/PathoFact.git git clone -b PathoFact --recursive https://git-r3lab.uni.lu/laura.denies/PathoFact.git
``` ```
## Pipeline environment ## Pipeline environment
...@@ -53,7 +53,7 @@ To download the tool you need to submit a request at https://services.healthtech ...@@ -53,7 +53,7 @@ To download the tool you need to submit a request at https://services.healthtech
- Look for "SignalP" and click on the link - Look for "SignalP" and click on the link
- Click on "Downloads" - Click on "Downloads"
- Click on the link for your platform for the version "Version 4.1g" - Click on the link for your platform for the version "Version 5.0g"
- Fill and submit the form - Fill and submit the form
After the installation, adjust the path for this tool in `config.yaml` (keyword `signalp`). After the installation, adjust the path for this tool in `config.yaml` (keyword `signalp`).
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment