Commit 13fdb55a authored by Laura Denies's avatar Laura Denies
Browse files

Update README.md

parent 4a26f7f5
......@@ -8,7 +8,7 @@ Furthermore, each module (toxins, virulence factors, and antimicrobial resistanc
# Requirements and installation
The main requirements are:
- `gcc/g++`
- `git` and `git lfs`
- `conda`
......@@ -33,7 +33,7 @@ Clone the repository and its sub-modules:
# activate git lfs
git lfs install
# clone branch incl. sub-modules
git clone -b PathoFact_updates --recursive https://git-r3lab.uni.lu/laura.denies/PathoFact.git
git clone -b PathoFact --recursive https://git-r3lab.uni.lu/laura.denies/PathoFact.git
```
## Pipeline environment
......@@ -53,7 +53,7 @@ To download the tool you need to submit a request at https://services.healthtech
- Look for "SignalP" and click on the link
- Click on "Downloads"
- Click on the link for your platform for the version "Version 4.1g"
- Click on the link for your platform for the version "Version 5.0g"
- Fill and submit the form
After the installation, adjust the path for this tool in `config.yaml` (keyword `signalp`).
......
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