Commit 0b03f678 authored by Laura Denies's avatar Laura Denies
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Update README.md

parent 3d0e05a5
......@@ -56,8 +56,7 @@ In "project" an unique name for your project need to be given, for example:
* project: Project_A_PathoFact
Pathofact as default will run the complete pipeline for the prediction of virulence factors, toxins and antimicrobial resistance genes.
If it is desired to run only part of the pipeline this can be identicated **within** the "Snakefile" by changing "w" to a different option:
If it is desired to run only part of the pipeline this can be identicated **within** the "Snakefile" by changing "w" to a different option:
* w = 'complete' (run complete pipeline, default setting)
* w = 'Tox' (run only workflow for Toxin prediction)
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