updated set-up.sh (issue #17, #19, #20, #21)

set-up.sh

 #!/bin/bash -l
 
-cd scripts
-# remove possible empty folders at start
-rm -rf VirSorter PlasFlow
-# Install deepARG (https://bitbucket.org/gusphdproj/deeparg-ss/src/master/)
-#git clone https://gaarangoa@bitbucket.org/gusphdproj/deeparg-ss.git
-# Install PlasFlow (https://github.com/smaegol/PlasFlow)
-git clone https://github.com/smaegol/PlasFlow
-#Install DeepVirFinder (https://github.com/jessieren/DeepVirFinder)
-#git clone https://github.com/jessieren/DeepVirFinder.git
-#Install VirSorter (https://github.com/simroux/VirSorter)
-git clone https://github.com/simroux/VirSorter.git
-cd VirSorter/Scripts
-make clean
-make
-
 ###########
 # DeepARG #
 ###########