Commit 004d9618 authored by Laura Denies's avatar Laura Denies
Browse files

Update README.md

parent 6ed7d968
......@@ -125,3 +125,15 @@ The command can be found in the script `cluster.sh` which can also be used to su
```bash
sbatch cluster.sh
```
### Test module
To test for the correct installation of the pipeline the testmodule can be run:
Include the required path to the SingalP v5.0 installation to the config file `test/test_config.yaml`
```
# activate env
conda activate PathoFact
# run the pipeline
snakemake -s test/Snakefile --use-conda --reason --cores 1 -p
```
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