Commit 0028bbdd authored by Laura Denies's avatar Laura Denies
Browse files

Update Combine_PathoFact_workflow

parent dd21f7e2
......@@ -31,7 +31,9 @@ include:
# master command
rule Analysis:
input:
expand("{OUTDIR}/{project}/PathoFact_{input_file}_predictions.csv",
expand(["{OUTDIR}/{project}/AMR/{input_file}_AMR_MGE_prediction_detailed.tsv",
"{OUTDIR}/{project}/Toxin_gene_library_{input_file}_report.tsv",
"{OUTDIR}/{project}/PathoFact_{input_file}_predictions.csv"],
OUTDIR=config["OUTDIR"], project=config["project"], input_file=config["input_file"])
output:
touch('PathoFact_analyis.done')
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