set-up.sh 352 Bytes
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#!/bin/bash -l

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###########
# DeepARG #
###########
# From installation instructions: https://bitbucket.org/gusphdproj/deeparg-ss/src/master/

# replace path in options.py
sed -i 's@^path\s*=.*$@path = "'$(realpath submodules/deeparg-ss)'"@' submodules/deeparg-ss/options.py

# make DIAMOND binary executable
chmod +x submodules/deeparg-ss/bin/diamond