elixir issueshttps://git-r3lab.uni.lu/groups/elixir/-/issues2023-05-12T12:52:33+02:00https://git-r3lab.uni.lu/elixir/metadata-tools/-/issues/20Fallback for invalid date format2023-05-12T12:52:33+02:00Vilem DedFallback for invalid date formatadd content of the date field to the storage duration criteriaadd content of the date field to the storage duration criteriahttps://git-r3lab.uni.lu/elixir/metadata-tools/-/issues/19Data sheets should be exported as separate datasets not data declarations2023-04-12T14:03:40+02:00Vilem DedData sheets should be exported as separate datasets not data declarationsDownstream hosting workflow treats dataset as a immutable unit.
Any joint datasets can be created later on.Downstream hosting workflow treats dataset as a immutable unit.
Any joint datasets can be created later on.https://git-r3lab.uni.lu/elixir/daisy-doc/-/issues/6New section on Admin features2023-01-20T14:00:08+01:00Vilem DedNew section on Admin features- user management
- admin notifications- user management
- admin notificationshttps://git-r3lab.uni.lu/elixir/jekyll-elixir-theme/-/issues/41implement assets fingerprinting for cache busting2022-12-01T14:26:27+01:00Valentin Grouesimplement assets fingerprinting for cache bustingsomething like https://github.com/tkareine/jekyll-minibundle
the goal is to force the browsers to refresh their cached version of the static files (css, js) when a new version is deployed.something like https://github.com/tkareine/jekyll-minibundle
the goal is to force the browsers to refresh their cached version of the static files (css, js) when a new version is deployed.https://git-r3lab.uni.lu/elixir/daisy-doc/-/issues/5Update permission description based on recent changes2022-11-15T16:32:03+01:00Vilem DedUpdate permission description based on recent changes- local custodians have now full rights
- VIP is not basically used - just when validating project form (one VIP has to be listed as local custodian)
-- local custodians have now full rights
- VIP is not basically used - just when validating project form (one VIP has to be listed as local custodian)
-https://git-r3lab.uni.lu/elixir/daisy-doc/-/issues/4Remove reference to OWNER of a record2022-10-27T14:03:07+02:00Vilem DedRemove reference to OWNER of a recordThere is no OWNER role of record.
There is only creator (with minor "c") - a user creating a record - not a role. Then there is local custodian - more role-like entitlement.There is no OWNER role of record.
There is only creator (with minor "c") - a user creating a record - not a role. Then there is local custodian - more role-like entitlement.https://git-r3lab.uni.lu/elixir/metadata-tools/-/issues/18Option N/A was added for some question2022-10-05T10:09:45+02:00Vilem DedOption N/A was added for some questionCover new choice N/A in all questions where it is available.Cover new choice N/A in all questions where it is available.https://git-r3lab.uni.lu/elixir/metadata-tools/-/issues/17Match question not by index but by regex2022-10-05T10:08:33+02:00Vilem DedMatch question not by index but by regexIndex matching proved to be an issue when adding more questions or moving questions around.
Either match question by exact string or come up with some uuid for each question (DSW style). UUID should be invisible to the user.Index matching proved to be an issue when adding more questions or moving questions around.
Either match question by exact string or come up with some uuid for each question (DSW style). UUID should be invisible to the user.https://git-r3lab.uni.lu/elixir/metadata-tools/-/issues/16Importer seems to create contract based on study contact2021-11-19T11:50:18+01:00Vilem DedImporter seems to create contract based on study contactThe contract should be created based on **submission** contactThe contract should be created based on **submission** contacthttps://git-r3lab.uni.lu/elixir/metadata-tools/-/issues/10Discuss and remove the export import of Legal Basis section in DISH2021-06-25T09:45:01+02:00Pinar AlperDiscuss and remove the export import of Legal Basis section in DISHWe had a discussion with Regina. The legal basis questions in dISH collect informationabout dat aprovider.
However their legal basis cannot be imported into DAISY as our legal basis. LCSB will have its own. policy.
These questions will ...We had a discussion with Regina. The legal basis questions in dISH collect informationabout dat aprovider.
However their legal basis cannot be imported into DAISY as our legal basis. LCSB will have its own. policy.
These questions will later be removed from DISH.https://git-r3lab.uni.lu/elixir/metadata-tools/-/issues/9Unpublished Partners cannot be validated2023-02-17T12:27:26+01:00Vilem DedUnpublished Partners cannot be validatedpartners are not published -> metadata-tools cannot access the records and validate the affiliationspartners are not published -> metadata-tools cannot access the records and validate the affiliationshttps://git-r3lab.uni.lu/elixir/metadata-tools/-/issues/5GDPR data types are not exported2021-04-01T23:49:35+02:00Vilem DedGDPR data types are not exportedhttps://git-r3lab.uni.lu/elixir/beacon/-/issues/23load css and js for LAP from the platform2020-09-01T14:50:54+02:00Laurent Heirendtlaurent.heirendt@uni.luload css and js for LAP from the platformJacek Lebiodajacek.lebioda@uni.luJacek Lebiodajacek.lebioda@uni.luhttps://git-r3lab.uni.lu/elixir/beacon/-/issues/22Check license scanning2020-07-13T16:38:28+02:00Jacek Lebiodajacek.lebioda@uni.luCheck license scanningJacek Lebiodajacek.lebioda@uni.luJacek Lebiodajacek.lebioda@uni.luhttps://git-r3lab.uni.lu/elixir/text-mining-resources-hub/-/issues/2unexpected behaviour2019-12-11T13:02:16+01:00Carlos Vegaunexpected behaviourHi @valentin.groues , why if I do
https://biokb.lcsb.uni.lu/tmh/getCooccurrence/DOID:2841?limit=100
I get results from Jensen service but if I do
https://biokb.lcsb.uni.lu/tmh/getCooccurrence/DOID:2841?limit=100&type=-26
I don't get ...Hi @valentin.groues , why if I do
https://biokb.lcsb.uni.lu/tmh/getCooccurrence/DOID:2841?limit=100
I get results from Jensen service but if I do
https://biokb.lcsb.uni.lu/tmh/getCooccurrence/DOID:2841?limit=100&type=-26
I don't get anything?
Is just that for that particular type there is nothing? Is weird, because it says there are elements with entity types -2https://git-r3lab.uni.lu/elixir/text-mining-resources-hub/-/issues/1Jensen: suport multiple types with get_co_occurrences2019-12-11T12:57:06+01:00Carlos VegaJensen: suport multiple types with get_co_occurrencesValentin GrouesValentin Groueshttps://git-r3lab.uni.lu/elixir/daisy-doc/-/issues/2Extend DAISY User Guide card to describe demo data, users and roles2020-03-02T14:03:37+01:00Pinar AlperExtend DAISY User Guide card to describe demo data, users and rolesWe will create a public DAISY, planned address for this deployment is https://daisy-demo.elixir-luxembourg.org
We need a section in the DAISY user guide that describes the data, users and roles in the demo deployment.We will create a public DAISY, planned address for this deployment is https://daisy-demo.elixir-luxembourg.org
We need a section in the DAISY user guide that describes the data, users and roles in the demo deployment.Pinar AlperPinar Alperhttps://git-r3lab.uni.lu/elixir/beacon/-/issues/16Migrate from Flask-OIDC2019-08-08T15:38:16+02:00Jacek Lebiodajacek.lebioda@uni.luMigrate from Flask-OIDCFlask-OIDC seems abandoned; change to something newerFlask-OIDC seems abandoned; change to something newerJacek Lebiodajacek.lebioda@uni.luJacek Lebiodajacek.lebioda@uni.luhttps://git-r3lab.uni.lu/elixir/metadata-tools/-/issues/1Storage Resource data needs to be harmonised in XLS files2018-07-18T12:05:20+02:00Pinar AlperStorage Resource data needs to be harmonised in XLS filesWe have duplicate data in DAISY when creating a new "Data File" and selecting "Storage Backend".We have duplicate data in DAISY when creating a new "Data File" and selecting "Storage Backend".Valentin GrouesValentin Groueshttps://git-r3lab.uni.lu/elixir/beacon/-/issues/12Nicer reloading of configuration2018-05-22T15:02:29+02:00Jacek Lebiodajacek.lebioda@uni.luNicer reloading of configurationCurrently, if one wants to update the configuration, the server needs to be restarted after making any changes. It'd be more convenient if there existed a way to reload configuration without shutting the service down.Currently, if one wants to update the configuration, the server needs to be restarted after making any changes. It'd be more convenient if there existed a way to reload configuration without shutting the service down.