Issues · IMP · GitLab

Installation error

IMP#161 · opened Apr 12, 2021 by Edward-Tristan
- 0
updated Apr 12, 2021
PathoFact: include latest version

imp3#23 · opened Mar 01, 2021 by Valentina Galata PathoFact feature update
- 1
updated Mar 01, 2021
Bug: missing prefix in ini/databases.smk

imp3#22 · opened Feb 11, 2021 by Valentina Galata bug
- 0
updated Feb 11, 2021
Preprocessing/trimming: cutadapt, nextseq

imp3#21 · opened Feb 09, 2021 by Valentina Galata bug
- 1
updated Feb 09, 2021
IMP image not installed

IMP#160 · opened Jan 17, 2021 by songb1230
- 0
updated Jan 17, 2021
Docs: Trimmomatic adapters

imp3#18 · opened Nov 11, 2020 by Valentina Galata documentation
- 0
updated Nov 11, 2020
MANTIS: setup and rules 4 of 5 tasks completed

imp3#15 · opened Oct 15, 2020 by Valentina Galata MANTIS enhancement feature installation
- 2
updated Mar 26, 2021
Read filtering: rm rRNA reads: replace sortmerna

imp3#12 · opened Aug 17, 2020 by Valentina Galata discussion enhancement feature
- 1
- 3
updated Mar 04, 2021
Assembly: merging/consensus: replace CAP3

imp3#11 · opened Jul 22, 2020 by Valentina Galata Assembly enhancement
- 16
updated Mar 17, 2021
can't find trimmomatic

IMP#153 · opened Feb 15, 2019 by Billy Taj
- 2
updated Apr 29, 2020
CalledProcessError in line 59 of /home/imp/code/rules/Preprocessing/filtering.rules:

IMP#151 · opened Jan 16, 2019 by TANKENGUO
- 1
updated Jan 16, 2019
git clone results in HTTPS error

IMP#149 · opened Dec 05, 2018 by Shea Connell
- 1
updated Jan 09, 2019
Does skip_preprocessing work (snakemake)?

IMP#147 · opened Nov 16, 2018 by Javier Tamames
- 0
updated Nov 20, 2018
IMP-specific prokka conda recipe needed

IMP#141 · opened Oct 02, 2018 by Cedric Laczny Important conda
- 1
updated Oct 04, 2018
Why are Fasta index and BAM index not created by distinct rules, but in the variant_calling rule?

IMP#140 · opened Oct 01, 2018 by Cedric Laczny Important bug
- 1
updated Oct 01, 2018
Error in idba_hybrid_assembly_2

IMP#139 · opened Sep 24, 2018 by Cedric Laczny bug
- 0
updated Sep 24, 2018
samtools-1.9 might break host filtering step

IMP#137 · opened Sep 21, 2018 by Cedric Laczny Important Update
- 4
updated Oct 08, 2018
Accelerating the rRNA filtering step

IMP#136 · opened Sep 14, 2018 by Cedric Laczny Enhancement
- 5
updated Oct 10, 2018
Read preprocessing using fastp

IMP#135 · opened Aug 14, 2018 by Cedric Laczny Enhancement Potential request
- 1
updated Oct 08, 2018
idba hybrid assembly error

IMP#134 · opened May 10, 2018 by Adam Blanchard
- 0
updated May 21, 2018