From cad19a7414976e269876cbf35e05f7ce86a0b930 Mon Sep 17 00:00:00 2001
From: "francois.ancien" <francois.ancien@uni.lu>
Date: Tue, 23 Apr 2024 10:30:40 +0200
Subject: [PATCH] Correcting pull data cwl
---
workflows/iderha-aggregate/aggregate-pulldata.cwl | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/workflows/iderha-aggregate/aggregate-pulldata.cwl b/workflows/iderha-aggregate/aggregate-pulldata.cwl
index 97ec42d..85e6e07 100644
--- a/workflows/iderha-aggregate/aggregate-pulldata.cwl
+++ b/workflows/iderha-aggregate/aggregate-pulldata.cwl
@@ -7,7 +7,7 @@ doc: "Task to pull data from EDC"
hints:
- class: DockerRequirement
- dockerPull: gitlab.lcsb.uni.lu:4567/luca.bolzani/iderha-test-deployment/test-aggregate-remote
+ dockerPull: gitlab.lcsb.uni.lu:4567/luca.bolzani/iderha-test-deployment/edc-client
inputs:
- id: input
@@ -16,8 +16,9 @@ inputs:
position: 1
outputs:
- - id: datalink
- type: stdout
+ datalink:
+ type: File
+ outputBinding:
+ glob: aggregated-ages.json
-stdout: stdout.txt
-baseCommand: ["aggregate_remote"]
+baseCommand: ["/app/edc_client.sh"]
--
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