Explore projects
-
Laura Denies / PathoFact
GNU General Public License v3.0 or laterUpdated -
Updated
-
-
Updated
-
Repository for NORMAN-SLE work organization at ECI, including list tracking, updates and documentation. Main representatives: Emma and Hiba.
Updated -
Updated
-
Environmental Cheminformatics / ShinyTPs
Artistic License 2.0ShinyTPs: Curate transformation products from text mining results from HSDB & PubChem
Updated -
Elisa Gomezdelope / GRL_sample_similarity_PD
MIT LicenseGraph representation learning modelling pipeline exploiting sample-similarity networks derived from high-throughput omics profiles to learn PD-specific fingerprints from the spatial distribution of molecular abundance similarities in an end-to-end fashion. The scripts apply the graph representation learning modelling pipeline on sample-similarity networks of transcriptomics and metabolomics data from the PPMI and the LuxPARK cohort, respectively.
Updated -
Graph representation learning modelling pipeline exploiting molecular interaction networks of transcriptomics (protein-protein interactions) and metabolomics (metabolite-metabolite interactions) to learn PD-specific fingerprints from the spatial distribution of molecular relationships in an end-to-end fashion. The scripts apply the graph representation learning modelling pipeline on networks of molecular interactions, where transcriptomics and metabolomics data from the PPMI and the LuxPARK cohort, respectively, are projected.
Updated -
Deployment and CI scriptage for the static sites
Updated -
This repository contains the code for statistical analyses performed in Chapter 3 of my thesis "Cross-sectional and longitudinal profiling of PD transcriptomics and metabolomics". The project consists on whole blood transcriptomics and blood plasma metabolomics cross-sectional and longitudinal profiling of Parkinson's disease patients and controls from the PPMI cohort and the LuxPARK cohort respectively, to identify differential molecular and higher-level functional features in PD.
Updated -
The COVIDminer text mining project (https://rupertoverall.net/covidminer/) reads the published literature concerning SARS-CoV-2 and COVID-19 to extract statements about (primarily molecular) interactions. Using the API associated with this project, p
Updated -
Annegrät Daujeumont / howto-cards
Creative Commons Zero v1.0 UniversalUpdated -
Elisa Gomezdelope / ML_UPDRSIII_metab_transc
MIT LicenseThis repository contains the code for ML analyses performed in Chapter 5 of my PhD thesis "Interpretable machine learning on omics data for the study of UPDRS III prognosis". The project consists on predicting the Unified Parkinson’s Disease Rating Scale Part III (UPDRS III) motor scores (mild/severe when classification) from whole blood transcriptomics and blood plasma metabolomics using measurements from the baseline clinical visit, and temporal or dynamic features engineered from a short temporal series of 4 and 3 timepoints, respectively, from the PPMI cohort and the LuxPARK cohort, aiming at identifying molecular and higher-level functional fingerprints linked specifically to the motor symptoms in PD.
Updated -
-
-
ESB / ONT_pilot_gitlab
GNU General Public License v3.0 or laterMethod testing and analyses of Oxford Nanopore Technology (ONT) sequencing runs Data obtained by sequencing "generous donor B" across several runs Original data prepared by Rashi (post-sequencing) Initial analyses performed by CCLUpdated -
Workflow for the COSMIC study samples. Based on IMP assemblies and automatic single sample binning, resulting bins are linked in different samples related to 1 patient (different time-points of fecal samples and samples from the mother).
Updated -
Soumyabrata Ghosh / jkan
MIT LicenseA lightweight, backend-free open data portal, powered by Jekyll
Updated