Explore projects

MOVED TO https://gitlab.lcsb.uni.lu/lcsb/howto/external

Practice repository basic git training.

Template repository for writing a paper the R3 way.

Code used for the analysis of the RNA-seq, ATAC-seq and ChIP-seq datasets produced in this study. Original fastq files deposited in https://ega-archive.org/, under the accession number EGAD00001009288.

ShinyTPs: Curate transformation products from text mining results from HSDB & PubChem

Repository for NORMAN-SLE work organization at ECI, including list tracking, updates and documentation. Main representatives: Emma and Hiba.

Basic practice repository for git trainings

This repository contains the code for ML analyses performed in Chapter 4 of my PhD thesis "Interpretable Machine Learning on omics data for biomarker discovery in Parkinson's disease". The project consists on performing Parkinson's disease (PD) case-control classification from blood plasma metabolomics measurements at the baseline clinical visit from the LuxPARK cohort, and from whole blood transcriptomics data at baseline as well as dynamic features engineered from a short temporal series of 4 timepoints from the PPMI cohort. The study involves evaluation of different feature selection strategies, The goal was to build and test a collection of ML models and, most interestingly, identify molecular and higher-level functional representations associated with PD diagnosis.

This is a mirror from https://github.com/BarlierC/RNetDys.