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elixir
pd2af
pd2af
Commits
608c2f56
Commit
608c2f56
authored
May 06, 2019
by
Denis Shirshov
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34cb745f
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64 changed files
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498 additions
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338 deletions
+498
-338
code/test-xml.rkt
code/test-xml.rkt
+1
-1
html/generated/result.sbgn
html/generated/result.sbgn
+159
-137
html/specification.html
html/specification.html
+29
-1
html/specification/a-cat-ss/af.sbgn
html/specification/a-cat-ss/af.sbgn
+1
-1
html/specification/a-cat-ss/pd.sbgn
html/specification/a-cat-ss/pd.sbgn
+4
-4
html/specification/a-inh-ss/af.sbgn
html/specification/a-inh-ss/af.sbgn
+1
-1
html/specification/a-inh-ss/pd.sbgn
html/specification/a-inh-ss/pd.sbgn
+4
-4
html/specification/complex_association/af.sbgn
html/specification/complex_association/af.sbgn
+7
-7
html/specification/complex_association/pd.sbgn
html/specification/complex_association/pd.sbgn
+3
-3
html/specification/complex_association_regulated/af.sbgn
html/specification/complex_association_regulated/af.sbgn
+8
-8
html/specification/complex_association_regulated/pd.sbgn
html/specification/complex_association_regulated/pd.sbgn
+4
-4
html/specification/complex_association_with_complex_name/af.sbgn
...ecification/complex_association_with_complex_name/af.sbgn
+7
-7
html/specification/complex_association_with_complex_name/pd.sbgn
...ecification/complex_association_with_complex_name/pd.sbgn
+3
-3
html/specification/complex_dissociation/af.sbgn
html/specification/complex_dissociation/af.sbgn
+7
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html/specification/complex_dissociation/pd.sbgn
html/specification/complex_dissociation/pd.sbgn
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-3
html/specification/dimerization_x2/af.sbgn
html/specification/dimerization_x2/af.sbgn
+1
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html/specification/dimerization_x2/pd.sbgn
html/specification/dimerization_x2/pd.sbgn
+3
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html/specification/elk_signalling/af.sbgn
html/specification/elk_signalling/af.sbgn
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html/specification/elk_signalling/pd.sbgn
html/specification/elk_signalling/pd.sbgn
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html/specification/hidden_inhibition_1/af.sbgn
html/specification/hidden_inhibition_1/af.sbgn
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html/specification/hidden_inhibition_1/pd.sbgn
html/specification/hidden_inhibition_1/pd.sbgn
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html/specification/hidden_inhibition_2/af.sbgn
html/specification/hidden_inhibition_2/af.sbgn
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html/specification/hidden_inhibition_2/pd.sbgn
html/specification/hidden_inhibition_2/pd.sbgn
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html/specification/i-sti-ss/af.sbgn
html/specification/i-sti-ss/af.sbgn
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html/specification/i-sti-ss/pd.sbgn
html/specification/i-sti-ss/pd.sbgn
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html/specification/logical_gates_or/af.sbgn
html/specification/logical_gates_or/af.sbgn
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html/specification/logical_gates_or/pd.sbgn
html/specification/logical_gates_or/pd.sbgn
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html/specification/multimerization_1/af.sbgn
html/specification/multimerization_1/af.sbgn
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html/specification/multimerization_1/pd.sbgn
html/specification/multimerization_1/pd.sbgn
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-3
html/specification/multimerization_2/af.sbgn
html/specification/multimerization_2/af.sbgn
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html/specification/multimerization_2/pd.sbgn
html/specification/multimerization_2/pd.sbgn
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-3
html/specification/oligomerization_x10/af.sbgn
html/specification/oligomerization_x10/af.sbgn
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-1
html/specification/oligomerization_x10/pd.sbgn
html/specification/oligomerization_x10/pd.sbgn
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html/specification/oligomerization_x3/af.sbgn
html/specification/oligomerization_x3/af.sbgn
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html/specification/oligomerization_x3/pd.sbgn
html/specification/oligomerization_x3/pd.sbgn
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html/specification/oligomerization_x4/af.sbgn
html/specification/oligomerization_x4/af.sbgn
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html/specification/oligomerization_x4/pd.sbgn
html/specification/oligomerization_x4/pd.sbgn
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html/specification/oligomerization_x5/af.sbgn
html/specification/oligomerization_x5/af.sbgn
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html/specification/oligomerization_x5/pd.sbgn
html/specification/oligomerization_x5/pd.sbgn
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html/specification/oligomerization_x6/af.sbgn
html/specification/oligomerization_x6/af.sbgn
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-1
html/specification/oligomerization_x6/pd.sbgn
html/specification/oligomerization_x6/pd.sbgn
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html/specification/oligomerization_x6_r/af.sbgn
html/specification/oligomerization_x6_r/af.sbgn
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html/specification/oligomerization_x6_r/pd.sbgn
html/specification/oligomerization_x6_r/pd.sbgn
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html/specification/oligomerization_x7/af.sbgn
html/specification/oligomerization_x7/af.sbgn
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-1
html/specification/oligomerization_x7/pd.sbgn
html/specification/oligomerization_x7/pd.sbgn
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-3
html/specification/oligomerization_x8/af.sbgn
html/specification/oligomerization_x8/af.sbgn
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-1
html/specification/oligomerization_x8/pd.sbgn
html/specification/oligomerization_x8/pd.sbgn
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-3
html/specification/oligomerization_x9/af.sbgn
html/specification/oligomerization_x9/af.sbgn
+1
-1
html/specification/oligomerization_x9/pd.sbgn
html/specification/oligomerization_x9/pd.sbgn
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-3
html/specification/raf-mek-erk/af.sbgn
html/specification/raf-mek-erk/af.sbgn
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-2
html/specification/raf-mek-erk/pd.sbgn
html/specification/raf-mek-erk/pd.sbgn
+8
-8
html/specification/ss-sti-i/af.sbgn
html/specification/ss-sti-i/af.sbgn
+1
-1
html/specification/ss-sti-i/pd.sbgn
html/specification/ss-sti-i/pd.sbgn
+4
-4
html/specification/translocation_1/af.sbgn
html/specification/translocation_1/af.sbgn
+1
-1
html/specification/translocation_1/pd.sbgn
html/specification/translocation_1/pd.sbgn
+2
-2
html/specification/translocation_2/af.sbgn
html/specification/translocation_2/af.sbgn
+6
-6
html/specification/translocation_2/pd.sbgn
html/specification/translocation_2/pd.sbgn
+3
-3
knowledge/sbgn_translation_ontology/sbgn_translation.tree
knowledge/sbgn_translation_ontology/sbgn_translation.tree
+2
-2
server/libs/odysseus
server/libs/odysseus
+1
-1
server/libs/odysseus_modules
server/libs/odysseus_modules
+1
-1
tests/_experiments.pdafer
tests/_experiments.pdafer
+17
-17
tests/elementary_regulation.pdafer
tests/elementary_regulation.pdafer
+18
-1
tests/test-results.tree
tests/test-results.tree
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tests/tests.pdafer
tests/tests.pdafer
+0
-1
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code/test-xml.rkt
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608c2f56
...
...
@@ -21,4 +21,4 @@
(
write-file
"../html/generated/result.sbgn"
af-xml
)
))
(
test-xml
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15-tag
.sbgn"
)
(
test-xml
"../knowledge/sbgn_examples/metabolismregulation.org/MR0
01-glycolysis
.sbgn"
)
html/generated/result.sbgn
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html/specification.html
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608c2f56
...
...
@@ -823,6 +823,34 @@
</tr>
</table>
<h3>
1.29 Logical gates or
</h3>
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class=
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ng-init=
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<table
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Newt
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<a
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SBGN-ML
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<a
href=
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Newt
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<tr
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>
<td
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</div>
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...
...
@@ -1642,7 +1670,7 @@
<div
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ng-hide=
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></div>
<footer>
<div>
Page generated
<b>
0
5
.05.2019
</b></div>
<div>
Page generated
<b>
0
6
.05.2019
</b></div>
</footer>
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...
...
html/specification/a-cat-ss/af.sbgn
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...
html/specification/a-cat-ss/pd.sbgn
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608c2f56
...
...
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608c2f56
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608c2f56
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html/specification/complex_association/af.sbgn
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608c2f56
...
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html/specification/complex_association/pd.sbgn
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html/specification/hidden_inhibition_1/af.sbgn
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