Commit 401ef3c5 authored by Denis Shirshov's avatar Denis Shirshov

12

parent ea856e45
# PD2AF Converter
PD2AF is a tool intended for translation of SBGN maps from Process Description to Activity Flow language.
## Project Navigation
* [REPOSITORY](https://gitlab.com/pd2af/pd2af) with all the relevant project's data
* [WEB INTERFACE](http://188.166.159.222/translator.html) for converter
* [SBGN EXAMPLES](https://gitlab.com/pd2af/pd2af/tree/master/knowledge/sbgn-examples/metabolismregulation.org) from *Metabolism Regulation project*
* [ISSUES](https://gitlab.com/pd2af/pd2af/issues) with current bugs and planned features
* [CONVERTER RULES](https://gitlab.com/ddenniss/odysseus_modules/blob/master/pd2af/pd2af.rkt) implemented in Racket language
* [TRANSLATION ONTOLOGY](https://gitlab.com/pd2af/pd2af/tree/master/knowledge/sbgn_translation_ontology/sbgn_translation.tree) that describes terms and ideas, used in the converter's code
......@@ -21,4 +21,4 @@
(write-file "../html/generated/result.sbgn" af-xml)
))
(test-xml "../knowledge/sbgn-examples/metabolismregulation.org/MR015-tag.sbgn")
(test-xml "../knowledge/sbgn_examples/metabolismregulation.org/MR015-tag.sbgn")
......@@ -3,7 +3,7 @@ dcam a:owl/Ontology title:"DCMI Namespace for metadata terms related to the DCMI
dc xmlns:http://purl.org/dc/terms file:dcterms.tree
rdf xmlns:http://www.w3.org/1999/02/22-rdf-syntax-ns# file:rdf.tree
rdfs xmlns:http://www.w3.org/2000/01/rdf-schema# file:rdfs.tree
tree file:tree.tree
tree file:tree.tree prefix:<none>
classes
VocabularyEncoding a:rdfs/Class comment:"An enumerated set of resources"
properties
......
mapper
namespaces
tree file:tree.tree prefix:<none>
classes
Action a:Class subclass-of:Rule
BiopaxClass a:Class
BiopaxProperty a:Property
ClassTranslation a:Class subclass-of:Translation
InstanceCreation a:Class subclass-of:Action
InstanceCreationIfNone a:Class subclass-of:InstanceCreation d:"Creates new instance with specified id unless instance with this id already exists"
Keyword a:Class subclass-of:`(Restriction (one-of <none>))`
MappingOntology same-as:TranslationOntology
Ontology a:Class
PropertyTranslation a:Class subclass-of:Translation
Rule a:Class part-of:Class,Property
SbgnClass a:Class
SbgnProperty a:Property
SourceOntology a:Class subclass-of:Ontology
TargetOntology a:Class subclass-of:Ontology
Translation a:Class subclass-of:Action
TranslationOntology a:Class subclass-of:Ontology d:"An ontology that maps SourceOntology into TargetOntology" comment:"I am not sure which name is more proper to use: Mapping Ontology or Translation Ontology"@author/ds
properties
id a:Property domain:InstanceCreation range:Id
if a:Property domain:Rule range:Code
sourceOntology a:Property domain:TranslationOntology range:SourceOntology
targetOntology a:Property domain:TranslationOntology range:TargetOntology
then a:Property domain:Rule range:Code,Keyword
to a:Property domain:SbgnClass,SbgnProperty,Rule range:BiopaxClass,BiopaxProperty
value a:Property domain:Rule range:Code,Literal
\ No newline at end of file
......@@ -8,7 +8,7 @@ owl instance-of:owl/Ontology iri:http://www.w3.org/2002/07/owl title:"The OWL 2
definitions is-defined-by:http://www.w3.org/2002/07/owl#
classes
AllDifferent instance-of:rdfs/Class label:"AllDifferent" comment:"The class of collections of pairwise different individuals" subclass-of:rdfs/Resource
AllDisjointrdfs/Classes instance-of:rdfs/Class label:"AllDisjointrdfs/Classes" comment:"The class of collections of pairwise disjoint classes" subclass-of:rdfs/Resource
AllDisjointClasses instance-of:rdfs/Class label:"AllDisjointClasses" comment:"The class of collections of pairwise disjoint classes" subclass-of:rdfs/Resource
AllDisjointProperties instance-of:rdfs/Class label:"AllDisjointProperties" comment:"The class of collections of pairwise disjoint properties" subclass-of:rdfs/Resource
Annotation instance-of:rdfs/Class label:"Annotation" comment:"The class of annotated annotations for which the RDF serialization consists of an annotated subject, predicate and object" subclass-of:rdfs/Resource
AnnotationProperty instance-of:rdfs/Class label:"AnnotationProperty" comment:"The class of annotation properties" subclass-of:rdf/Property
......
sbgn
namespaces
rdf xmlns:http://www.w3.org/1999/02/22-rdf-syntax-ns spec:ontology_languages/rdf.tree
rdfs xmlns:http://www.w3.org/2000/01/rdf-schema spec:ontology_languages/rdfs.tree
owl xmlns:http://www.w3.org/2002/07/owl spec:ontology_languages/owl.tree
tree spec:ontology_languages/tree.tree prefix:<none>
classes
Application a:rdfs/Class
Document a:rdfs/Class
Tag a:rdfs/Class part-of:Document
Namespace a:rdfs/Class
properties
generated-by a:rdf/Property domain:Document,Tag range:Application
origin-url a:rdf/Property domain:Document,Tag range:Url
version a:owl/FunctionalProperty domain:Namespace range:String
xmlns a:rdf/Property domain:Document range:URI
instances
Namespace_0.2 a:Namespace version:"0.2" generated-by:Newt,VANTED xmlns:http://sbgn.org/libsbgn/0.2
Namespace_0.3 a:Namespace version:"0.3" origin-url:github.com/sbgn/libsbgn xmlns:http://sbgn.org/libsbgn/0.3
\ No newline at end of file
......@@ -16,16 +16,47 @@ sbgn-pd
EquivalenceArc
LogicArc
ModulationConnectingArc
Inhibition
Modulation
NecessaryStimulation
Stimulation
Catalysis
Inhibition
NecessaryStimulation
Stimulation
Catalysis
ProcessConnectingArc
Consumption
Production
ContainerNode
Compartment
ControlledVocabulary ; part-of:`(union-of UnitOfInformation StateVariable)`
MaterialType part-of:UnitOfInformation section-hierarchy-relation:instance-of
NonMacromolecularIon label:"mt:ion" sbo:0000327
NonMacromolecularRadical label:"mt:rad" sbo:0000328
RibonucleicAcid label:"mt:rna" sbo:0000250
DeoxribonucleicAcid label:"mt:dna" sbo:0000251
Protein label:"mt:prot" sbo:0000297
Polysaccharide label:"mt:psac" sbo:0000249
ConceptualType part-of:UnitOfInformation section-hierarchy-relation:instance-of
Gene label:"ct:gene" sbo:0000243
TranscriptionStartSide label:"ct:tss" sbo:0000329
GeneCodingRegion label:"ct:coding" sbo:0000335
GeneRegulatoryRegion label:"ct:grr" sbo:0000369
MessengerRNA label:"ct:mRNA" sbo:0000278
CovalentModification part-of:StateVariable section-hierarchy-relation:instance-of
Acetylation label:"Ac" sbo:0000215
Glycosylation label:"G" sbo:0000217
Hydrohylation label:"OH" sbo:0000233
Methylation label:"Me" sbo:0000214
Myristoylation label:"My" sbo:0000219
Palmytoylation label:"Pa" sbo:0000218
Phosphorylation label:"P" sbo:0000216
Protonation label:"H" sbo:0000212
Sulfation label:"S" sbo:0000220
Ubiquitination label:"Ub" sbo:0000224
PhysicalCharacteristic part-of:UnitOfInformation,`(union-of PerturbingAgent Phenotype)` section-hierarchy-relation:instance-of
Temperature label:"pc:T" sbo:0000147
Voltage label:"pc:V" sbo:0000259
pH label:"pc:pH" sbo:0000304
CardinalityCharacteristic part-of:UnitOfInformation,Multimer section-hierarchy-relation:instance-of
Cardinality label:`(regexp 'N:\d+')` sbo:0000364
EntityPoolNode
Complex subclass-of:ContainerNode
Macromolecule
......@@ -55,8 +86,8 @@ sbgn-pd
bbox domain:SbgnElement range:Float:4
label domain:`(difference-of (union-of EntityPoolNode CloneMarker Phenotype ReferenceNode ContainerNode) SourceAndSink)` range:String
state a:owl/ObjectProperty domain:EntityPoolNode range:StateVariable
value domain:StateVariable range:String,`(one-of <active> <inactive> <empty>)`
variable domain:StateVariable range:String,`(one-of <none>)`
uoi a:owl/ObjectProperty domain:EntityPoolNode range:UnitOfInformation
value domain:StateVariable range:String,`(one-of <active> <inactive> <empty>)` cardinality:1
variable domain:StateVariable range:`(union-of String (one-of <none>))` cardinality:1
uoi a:owl/ObjectProperty domain:EntityPoolNode range:UnitOfInformation max-cardinality:1
instances
Empty_state a:StateVariable variable:<none> value:<empty>
\ No newline at end of file
tree
namespaces
n3
rdf xmlns:http://www.w3.org/1999/02/22-rdf-syntax-ns file:rdf.tree
rdfs xmlns:http://www.w3.org/2000/01/rdf-schema file:rdfs.tree
owl xmlns:http://www.w3.org/2002/07/owl file:owl.tree
......@@ -24,6 +23,7 @@ tree
Literal a:Class union-of:Integer,Float,String,Year,Date,Url,Path
Ref a:Class union-of:Id,URI,IRI
core_syntax d:"Classes and Properties used in schema (but they can be also used in the data files)"
a eq:rdf/type
alt-id a:Property domain:Resource range:Id d:"alternative id(s)"
id-ru d:"Id in Russian"
id-en d:"Id in English"
......@@ -36,7 +36,7 @@ tree
domain eq:rdfs/domain
; eq a:Property type:functional domain:Resource range:Resource d:"establishes equivalence between considered item and some rdf/rdfs/owl element"
eq same-as:same-as
instance-of alt-id:i-of,a a:Property eq:n3/a,rdf/type
instance-of eq:a
inverse-of eq:owl/inverseOf
Namespace a:Class
Property eq:rdf/Property
......@@ -47,7 +47,8 @@ tree
regexp domain:Datatype range:Regexp d:"A regular expression that defines a range of possible symbols and their combinations for scalar datatypes"
Resource eq:rdfs/Resource
rel a:Property domain:Resource range:Resource d:"Establishes relation between Object and Subject"
same-as owl/sameAs:owl/sameAs
; TODO: at reading, semantic should be following: first read all properties from the class pointed by owl/sameAs, and then overwrite them by properties pointed directly in the definition line. In this case type owl/Property will be overwrited by type owl/SymmetricProperty
same-as a:owl/SymmetricProperty owl/sameAs:owl/sameAs
section-class a:Property domain:TabtreeSection range:Class d:"Defines default classes of the items in subsequent hierarchy" example:"For section 'classes' it would be 'section-class:Class', for section 'properties' it would be 'section-class:Property'"
section-hierarchy-relation a:Property domain:TabtreeSection range:Property d:"Defines relations between elements in subsequent hierarchy that follows current section in .tree file. Relation goes from one element (subject) to another element (object), that is always exactly one level up in hierarchy"
spec a:Property domain:Namespace range:Path
......
publishers
europe
england
BMC name:"BioMed Central" hq:London part-of:Springer_Nature
Cambridge_University_Press hq:Cambridge start:1534
Nature_Research former-name:Nature_Publishing_Group hq:London start:1869 part-of:Springer_Nature
Oxford_University_Press hq:Oxford start:1586
germany
Holtzbrinck_Publishing_Group hq:Stuttgart merged-to:Springer_Nature:2015
Springer_Science hq:Berlin,Heidelberg merged-to:Springer_Nature:2015
Springer_Nature hq:Berlin start:2015
netherlands
Elsevier name:"Elsevier Ltd." hq:Amsterdam
IOS_Press hq:Amsterdam start:1987 member-of:STM
IOS_Press_Inc subsidiary-of:IOS_Press hq:Washington start:1990
russia
Elibrary name:"Научная электронная библиотека" hq:Moscow
north_america
canada
Thomson_Reuters name:"Thomson Reuters Corporation" hq:Toronto
usa
Mary_Ann_Liebert name:"Mary Ann Liebert, Inc." hq:New_Rochelle
PLOS deabbr:"Public Library of Science" hq:San_Francisco start:2000
Wiley name:"John Wiley & Sons" hq:Hoboken
\ No newline at end of file
research_center keys-order:alt-id,deabbr,name,hq,office,uni,org,company,start,url,part-of
EMBL
EML_Research former-name:"European Media Laboratory" url:eml-r.org
canada
BaderLab hq:Toronto uni:UToronto
Donnelly_Centre uni:UToronto
OICR name:"Ontario Institute for Cancer Research" hq:Toronto
china
BGI_Group former-id:Beijing_Genomics_Institute hq:Shenzhen start:1999
england
BirbeckCollege hq:Bloomsbury start:1823 uni:ULondon
CISBAN deabbr:"Center for Integrated Systems Biology of Ageing and Nutrition" hq:Newcastle uni:UNewcastle url:ncl.ac.uk/cisban
EBI alt-id:European_Bioinformatics_Institute,EMBL-EBI name:"European Bioinformatics Institute" hq:Hinxton part-of:EMBL
IBabraham name:"Babraham Institute" hq:Babraham
ICLondon name:"Imperial College London" hq:London start:1823
ISanger hq:Hinxton
MIB name:"Manchester Institute of Biotechnology" hq:Manchester uni:UManchester start:2006 url:mib.ac.uk
MCISB name:"Manchester Centre for Integrative Systems Biology" uni:UManchester
OUCS deabbr:"Oxford University Computing Services" hq:Oxford uni:UOxford start:1958 end:2012
france
ANL name:"Argonne National Laboratory" hq:Lemont start:1911
EISBM name:"European Institute for Systems Biology and Medicine" hq:Lyon
ENPC name:"École nationale des ponts et chaussées" hq:Champs-sur-Marne start:1747
ICurie name:"Curie Institute" hq:Paris
INRIA name:"French Institute for Research in Computer Science and Automation" hq:Rocquencourt office:Bordeaux,Grenoble,Lille,Nancy,Rocquencourt,Rennes,Saclay,Sophia_Antipolis start:1967
germany
ARI name:"Aerodynamic Research Institute" hq:Gottingen
CBioTu deabbr:"Center for Bioinformatics Tubingen" uni:UTubingen
FZI/AIFB name:"Research Center for Information Technology" hq:Karlsruhe uni:KIT url:fzi.de
HITS name:"Heidelberg Institute for Theoretical Studies" hq:Heidelberg start:2010 url:h-its.org
IMISE deabbr:"Institute for Medical Informatics, Statistics and Epidemiology" uni:ULeipzig
Institute_of_Computer_Science uni:Martin_Luther_University hq:Halle
IPK_Gatersleben name:"Leibniz Institute of Plant Genetics and Crop Plant Research" hq:Gatersleben part-of:Leibniz_Association
Leibniz_Association name:"Leibniz Association" hq:Berlin
Max_Planck_Society hq:Munich start:1911
MPII deabbr:"Max Planck Institute for Informatics" hq:Saarbrucken start:1993 url:mpi-inf.mpg.de
Systems_Biology_Bioinformatics_Rostock uni:URostock url:sbi.uni-rostock.de
Tubingen_Center_for_Bioinformatics hq:Tubingen uni:UTubingen
italy
Mario_Negri_Institute name:"Mario Negri Institute for Pharmacological Research" hq:Milan
japan
AIST name:"National Institute of Advanced Industrial Science and Technology" hq:Tsukuba
CBRC deabbr:"Computational Biology Research Center" rcenter:AIST
IAB deabbr:"Institute for Advanced Biosciences" uni:UKeio
ICOT deabbr:"Institute for New Generation Computer Technology" start:1982
JAIST name:"Japan Advanced Institute of Science and Technology" hq:Kanazawa
Japanese_Institute_of_Genetics hq:Mishima start:1949
NII deabbr:"National Institute of Informatics" hq:Tokyo start:1973,2000
RIKEN alt-id:Riken_CIMS name:"RIKEN Center for Integrative Medical Sciences" hq:Wako
Systems_Biology_Institute alt-id:SBI hq:Tokyo url:sbi.jp president:Hiroaki_Kitano
netherlands
Centrum_Wiskunde_and_Informatica alt-id:CWI hq:Amsterdam start:1948
new_zealand
ABI name:"Auckland Bioengineering Institute" hq:Auckland uni:UAuckland
russia
CCAS alt-id:ВЦ_РАН name:"Вычислительный центр имени А.А.Дородницына РАН" hq:Moscow start:1955 url:ccas.ru
ICB alt-id:ИБК_РАН deabbr:"Institute of Cell Biophysics" name:"Институт Биофизики Клетки РАН" hq:Pushchino start:1952,1990 url:www.icb.psn.ru
ICYB name:"Институт кибернетики имени В.М.Глушкова" hq:Kiev start:1962
Institute_of_Systems_Biology alt-id:ISB,ИСБ hq:Новосибирск
NAkademgorodok name:"Новосибирский Академгородок" hq:Новосибирск start:1957
SPIIRAS name:"Санкт-Петербургский институт информатики и автоматизации" hq:Saint-Petersburg start:1977
VINITI alt-id:ВИНИТИ_РАН name:"Всероссийский институт научной и технической информации РАН" hq:Moscow start:1952 url:viniti.ru d:"maintains the largest publications database in Russia"
YUGINFO alt-id:ЮгИнфо hq:Rostov-on-Don start:1958 uni:SFedU
МИАН deabbr:"Математический институт им. В.А.Стеклова"ru,"Steklov Institute of Mathematics"en hq:Moscow start:1934
ЛОМИ deabbr:"Ленинградское отделение Математического института им. Стеклова" part-of:МИАН
scotland
UEMS name:"University of Edinburgh Medical School" uni:UEdinburgh
south_africa
STIAS deabbr:"Stellenbosch Institute for Advanced Study" uni:UStellenbosch
spain
Barcelona_Supercomputing_Center alt-id:BSC hq:Barcelona
switzerland
Institute_of_Neuroinformatics uni:ETH_Zurich
Swiss_Institute_of_Bioinformatics alt-id:SIB hq:Lausanne
turkey
BilkentCB name:"Bilkent Center for Bioinformatics" uni:UBilkent
usa
Biocompexity_Institute old-id:Virginia_Bioinformatics_Institute hq:Blacksburg url:bi.vt.edu uni:Virginia_Tech
BIVT deabbr:"Biocomplexity Institute of Virginia Tech" hq:Blacksburg,Arlington uni:Virginia_Tech
BNMC deabbr:"Biological Network Modeling Center" hq:Pasadena uni:Caltech url:beckmaninstitute.caltech.edu/bnmc.shtml
CCAM deabbr:"Center for Cell Analysis and Modeling" uni:UConn_Health
Craig_Venter_Institute alt-id:JCVI deabbr:"J. Craig Venter Institute"
CSHL deabbr:"Cold Spring Harbor Laboratory" hq:New_York
Dana-Farber deabbr:"Dana-Farber Cancer Institute" hq:Boston start:1947 url:dana-farber.org affiliate-of:Harvard_Medical_School
Fred_Hutchinson_Cancer_Research_Center hq:Seattle
FCCC deabbr:"Fox Chase Cancer Center" hq:Philadelphia
GUMC name:"Georgetown University Medical Center" hq:Washington uni:Georgetown_University
Harvard_Medical_School hq:Boston start:1782 uni:UHarvard
HILS deabbr:"The Huck Institute for Life Sciences" uni:UPenn
ICSI deabbr:"International Computer Science Institute" hq:Berkeley start:1988
IGladstone name:"Gladstone Institutes" hq:San_Francisco
IHMC deabbr:"Florida Institute for Human and Macine Cognition" hq:Pensacola url:ihmc.us
Institute_for_Systems_Biology hq:Seattle url:systemsbiology.org abbr:ISB
IOB uni:UJohnsHopkins
JHUSOM deabbr:"Johns Hopkins School of Medicine" hq:Baltimore uni:UJohnsHopkins start:1893
LBNL deabbr:"Lawrence Berkeley National Labs" uni:UCalifornia hq:Berkeley start:1931
Massachusetts_General_Hospital hq:Boston start:1811
Microsoft_Research hq:Redmond company:Microsoft start:1991
MSKCC name:"Memorial Sloan Kettering Cancer Center" hq:New_York
National_Cancer_Institute hq:Rockville part-of:NIH
NCBI deabbr:"National Center for Biotechnology Information" hq:Bethesda start:1988 part-of:NLM
NYULMC name:"NYU Langone Medical Center" uni:NYU
RIStanford deabbr:"Stanford Research Institute" hq:Menlo_Park start:1946
Rockford_Research_Institute hq:Rockford start:1961
RPCCC deabbr:"Roswell Park Comprehensive Cancer Center" hq:Buffalo start:1898 url:roswellpark.org
TIGR deabbr:"The Institute for Genomic Research" hq:Rockville
UChicago-CDIS name:"Center for Data Intensive Science" uni:UChicago
UConn_SOM deabbr:"UConn School of Medicine" hq:Farmington url:medicine.uconn.edu
USC_NCCC name:"USC Norris Comprehensive Cancer Center" uni:USouthernCalifornia
academic_search_engines
Google_Scholar url:scholar.google.com owner:Google start:2004
Microsoft_Academic start:2012,2016 owner:Microsoft
Scirus start:2001 end:2014 owner:Elsevier
SciSearch url:stn-international.com/scisearch.html
citation_databases
CiteSeer url:citeseerx.ist.psu.edu owner:UPenn start:2007
Index_Copernicus start:1999 owner:Index_Copernicus_International url:indexcopernicus.com
Pubmed ref:systems_biology/databases
Scopus owner:Elsevier url:scopus.com start:2004
WOS alt-id:Web_of_Science owner:Clarivate_Analytics url:webofknowledge.com start:2016
РИНЦ deabbr:"Российский индекс научного Цитирования" developer:ELibrary url:elibrary.ru
companies
Clarivate_Analytics hq:Philadelphia start:2016
ISI name:"Institute for Scientific Information" hq:Philadelphia start:1960 acquired-by:Thomson_Scientific_and_Healthcare:1992:->Thomson_ISI
Thomson_ISI sold-as:Clarivate_Analytics:2016
citation_indexes
AHCI deabbr:"Arts and Humanities Citation Index" developer:ISI
CSCI deabbr:"Chinese Science Citation Index" start:1987
CDJP deabbr:"Citation Database for Japanese Papers" start:1995 developer:NII
G-Index start:2006 developer:Leo_Egghe formule:`(constraint <= (* g g) (apply + (take (sort citation-numbers >) g)))`
H-Index alt-id:Hirsch_Index start:2005 developer:Jorge_Hirsch formule:`(apply max (map min (by-index (sort citation-numbers >) 0)))`
I-Index start:2006 developer:Marek_Kosmulsky,Gangan_Prathap uses:H-Index
K-Index alt-id:Kardashian_Index start:2014 named-after:Kim_Kardashian formule:`(let ([estimated-followers (λ (c) (* 43.3 (expt c 0.32)))]) (/ real-followers (estimated-followers number-of-citations)))`
Scopus_Index developer:Scopus
SCI deabbr:"Science Citation Index" developer:Eugene_Garfield org:ISI start:1964
SJR deabbr:"SCImago Journal Rank"
SSCI deabbr:"Social Sciences Citation Index" developer:ISI
Web_of_Science_Index developer:Web_of_Science
РИНЦ_Index
УНЦ deabbr:"Указатель Научного Цитирования" start:1974 developer:VINITI
author_ids
ORCID deabbr:"Open Researcher and Contributor ID" url:orcid.org start:2012
ResearcherID url:researcherid.com start:2008 developer:Thomson_Reuters
Scopus_AuthorID system:Scopus
SPIN_РИНЦ system:РИНЦ
social_networks
ResearchGate url:researchgate.net
\ No newline at end of file
This diff is collapsed.
unordered keys-order:alt-id,deabbr,year,start,designer,developer,author,company,research-center,org,uni,place,project,lang,url
articles
Turing_1950 title:"Computing machinery and intelligence" author:Alan_Turing
computer_algebra_system
FORMAC year:196x designer:Jean_Sammet
Mathcad year:1986 company:Mathsoft
SciLab year:1990 research-center:INRIA,ENPC
computers
Analytical_Engine year:1910 designer:Henry_Babbage
CSIRAC year:1949 designer:Trevor_Pearcey uni:UMelbourne lang:INTERPROGRAM
Datamatic_1000 year:1955 company:Honeywell,Raytheon
EC-1840 city:Минск
EDSAC year:1950 uni:UCambridge
ENIAC year:1945 designer:John_Mauchly,Presper_Eckert lang:Brief_Code,Short_Code organization:US_Army
ERA_ATLAS year:1950 company:US_Navy
UNIVAC_1101 year:1951 designer:Seymour_Cray company:ERA
Honeywell_200 year:1960? company:Honeywell lang:COBOL
Honeywell_800 year:1960 company:Honeywell lang:COBOL,Fortran
IBM_1401 year:1959 company:IBM lang:COBOL,RPG,Fortran
IBM_1620 year:1959 company:IBM
IBM_650 year:1953 company:IBM
IBM_701 year:1952 designer:Nathaniel_Rochester company:IBM lang:Speedcoding
IBM_704 year:1954 company:IBM lang:Fortran,Lisp,COMIT
IBM_7070 year:1958 company:IBM
UNIVAC_1103 year:1953 designer:Seymour_Cray company:ERA
UNIVAC_I year:1951 designer:Presper_Eckert company:Remington_Rand
Whirlwind_I year:1951 uni:MIT
Z3 year:1941 designer:Konrad_Zuse
Z4 year:1942 designer:Konrad_Zuse
БК-0010 company:НИИ_Научный_Центр plant:Квант production:1983-1993
ДВК company:НИИ_Научный_Центр plant:Квант version:ДВК-3,ДВК-4
Искра-1030 city:Курск
УК-НЦ company:НИИ_Научный_Центр plant:Квант
conferences
ACM-GAMM
HOPL name:"History of Programming Languages" organizer:SIGPLAN
HOPL-I start:01.06.1978 place:Los_Angeles end:03.06.1978
HOPL-II start:20.04.1993 place:Cambridge_MA end:23.04.1993
HOPL-III start:09.06.2007 place:San_Diego end:10.06.2007
HOPL-IV place:San_Diego date:06.2020
databases
DEX year:198x type:graph_database
Sparksee year:2008 from:DEX type:graph_database
game_engines
Godot year:2007 company:OKAM_Studio
Id_Tech_1 alt-id:Doom_engine year:1993 company:Id_Software
Id_Tech_2 alt-id:Quake_engine year:1996 company:Id_Software
Id_Tech_3 alt-id:Quake-III_Arena_engine year:1999 company:Id_Software
Id_Tech_4 alt-id:Doom_3_engine year:2004 company:Id_Software
Id_Tech_5 year:2011 company:Id_Software publisher:Bethesda_Softworks
Id_Tech_6 year:2016 company:Id_Software
games
Broodwar company:Blizzard_Entertainment after:Starcraft type:RTS
Civilization start:1991 author:Sid_Meier company:MicroProse v:Civilization_II:1996,Civilization_III:2001,Civilization_IV:2005,Civilization_Revolution:2008,Civilization_V:2010,Civilization_VI:2016, type:TBS
Classic_Empire start:1977 author:Walter_Bright type:TBS
Starcraft company:Blizzard_Entertainment type:RTS
Warcraft company:Blizzard_Entertainment type:RTS
Wesnoth deabbr:The_Battle_for_Wesnoth start:2005 author:David_White lang:C++,Lua type:TBS
indexes
Comparison_of_NN_Simulators url:grey.colorado.edu/emergent/index.php/Comparison_of_Neural_Network_Simulators
labs
КСАП deabbr:"Кафедра систем автоматизированного проектирования" start:1987 uni:ICTIS url:sapr.ictis.sfedu.ru
mobile_frameworks
Flutter
React_Native
neural_networks
SIMBRAIN
packages
XLispStat year:1988 designer:Luke_Tierney,David_Betz language:XLISP
platforms
JVM deabbr:"Java Virtual Machine" company:Oracle
CLR deabbr:"Common Language Runtime" company:Microsoft
project_programs
ESPRIT deabbr:"European Strategic Program on Research in Information Technology"
Fifth_Generation_Computer_Systems d:"initiative by Japan's government" start:1982
Strategic_Computer_Initiative owner:US_Defense
smartphones
iphone
I4 released:06.2010 ram:512
I5 released:09.2012 ram:1000
I6 released:09.2014 ram:1000
I6S
ISE released:03.2016
I7 released:09.2016 ram:2000
I8 released:09.2017 ram:3000
IPhone_XS released:09.2018 ram:4000 os:iOS_12
\ No newline at end of file
applications keys-order:year,designer,company,group,uni,org,lang,from,url
archivators
RAR year:1993 designer:Eugene_Roshal
browsers
Chrome year:2008 company:Google
Firefox year:2002 company:Mozilla_Foundation
Internet_Explorer year:08.1995 company:Microsoft
Netscape_Navigator year:12.1994 company:Netscape
Opera year:04.1995 company:Opera_Software
code_editors
Atom year:02.2014 company:GitHub_Inc
ed year:1971 designer:Ken_Thompson from:QED
Emacs year:1976 designer:Richard_Stallman,Guy_Steele
Notepad++ year:11.2003 designer:Don_Ho
PSPad year:03.2001 designer:Jan_Fiala
QED year:1966 designer:Butler_Lampson,Peter_Deutsch from:<?>
sed year:1974 designer:Lee_McMahon from:ed
TECO year:1962 designer:Dan_Murphy
vi year:1976 designer:Bill_Joy lang:C from:<?>
database_management_systems
Access year:1992 company:Microsoft
HeidiSQL year:04.2006 designer:Ansgar_Becker
PhpMyAdmin year:09.1998 designer:Tobias_Ratschiller group:The_phpMyAdmin_Project
file_managers
Far_Manager year:1996 designer:Eugene_Roshal deabbr:"File and archive manager"
Midnight_Commander year:1994 designer:Miguel_de_Icaza
Norton_Commander year:1986 designer:John_Socha
Total_Commander year:1993 designer:Christian_Ghisler previous-name:Windows_Commander
Volkov_Commander year:1992 designer:Vsevolod_Volkov
graph_editors
Gephi year:2008 lang:Java url:gephi.org lib:OpenGL
Graphviz url:graphviz.org developer:AT&T,<opensource>
Grasper url:ai.sri.com/~grasper developer:Peter_Karp
SocNetV
Tulip year:2001 lang:C++ url:tulip.labri.fr d:"manipulates huge graphs with over 1e6 elements"
ide
Eclipse year:11.2001 company:Eclipse_Foundation
IntelliJ company:JetBrains
Android_Studio
Microsoft_Visual_Studio year:1997 company:Microsoft
NetBeans year:1996 company:Apache_Software_Foundation,Oracle_Corporation
WebStorm year:2010 company:JetBrains
VSCode deabbr:"Visual Studio Code" initial-release:2015 company:Microsoft based-on:Electron
note_takers
Evernote
Google_Keep
plotters
GNU_Plot
project_managers
Asana
Basecamp
ClickUp company:Mango_Technologies
Jira
Trello year:2011 company:Fog_Creek_Software
spreadsheets
Airtable year:2012 company:Airtable_company
task_managers
TickTick
Todoist
time_trackers
Toggl company:Toggl_OU
timers
ClearFocus
validators
Schematron year:1999 uni:Academia_Sinica developer:Rick_Jelliffe validates:XML
\ No newline at end of file
community
Clojure_Community url:facebook.com/groups/clojure.course
ClojuriansSlack url:clojurians.slack.com
companies
Flexiana url:flexiana.com hq:Telc
excersises
4clojure url:4clojure.com
jargon
10x_developer
people
Rich_Hickey bdate:196x education:SUNY job:Cognitect twitter:twitter.com/richhickey
tools
Lacinia github:github.com/walmartlabs/lacinia implements:GraphQL
Luminus type:web_framework url:luminusweb.net github:github.com/luminus-framework mail-list-url:groups.google.com/forum/?fromgroups#!forum/luminusweb
Pedestal company:Cognitect
websites
Clojure.org url:clojure.org
\ No newline at end of file
syntax_sugar
quote form:<'...>
ref form:<#'...>
regular_expression form:<#"...">
\ No newline at end of file
setup
Install_JDK url:oracle.com/technetwork/java/javase/downloads/jdk12-downloads-5295953.html
Install_Maven
Install_Clojure
\ No newline at end of file
companies keys-order:name,former-name,alt-id,deabbr,hq,former-hq,office,url,start,end,renamed-to,merged-to,acquired-by,splitted-to,takeover-by,purchased-by,sold-to,uni,company,org,product,service,founder,nasdaq,d
asia
japan
Sony hq:Tokyo
europe
czech_republic
JetBrains hq:Prague start:2000
england
Acorn_Computers hq:Cambridge start:1978
GlaxoSmithKline hq:Brentford
INMOS hq:Bristol start:1978 end:1989 acquired-by:SGS-Thomson
RRE name:"Royal Radar Establishment" hq:Malvern start:1953 type:"research center"
estonia
3D_Technologies_R hq:Tartu start:2006
Toggl_OU hq:Tallinn
france
Alsys hq:La_Celle-Saint-Cloud start:1980 end:1995 merged-to:Thomson_Software_Products
Atari hq:Paris start:2009
Ateji hq:Paris start:2005
Bull_SAS hq:Les_Clayes-sous-Bois start:1931
Fantaisie_Software hq:Fegersheim
Infogrames_Entertainment hq:Paris start:1983 renamed-to:Atari
MLstate hq:Paris start:2007
germany
SAP name:"SAP SE" deabbr:"Systems, Applications & Products in Data Processing" hq:Walldorf start:1972
italy
SGS_Microelettronica end:1987 merged-to:STMicroelectronics
netherlands
STMicroelectronics hq:Amsterdam start:1987
TIOBE deabbr:"The Importance Of Being Earnest" hq:Eindhoven
norway
Norsk_Regnesentral name:"Norwegian Computing Center" hq:Oslo start:1952
scotland
Eight_Pillars name:"Eight Pillars Ltd" hq:Edinburgh
sweden
Ericsson hq:Stockholm start:1876
Neo4j_Inc hq:Malmö,San_Francisco start:2000
switzerland
ABB_Group hq:Zurich start:1988
Oberon_microsystems hq:Zurich uni:ETH_Zurich
north_america
usa
Adobe_Systems alt-id:Adobe hq:San_Jose start:1982
Allaire hq:Newton former-hq:Cambridge_MA start:1995 acquired-by:Macromedia:2001
Amazon hq:Seattle start:1994
AOL
Aonix start:1996 end:2010 renamed-to:Atego
Apache_Foundation name:"Apache Software Foundation" hq:Forest_Hill start:1999
Apple former-name:"Apple Computer Company" alt-id:Apple_Inc,Apple_Computer hq:Cupertino start:1976
AT alt-d:AT&T hq:Dallas office:Atlanta,Austin,Middletown,Redmond,San_Ramon,Warrenville start:1885
Atego start:2010 end:2014 acquired-by:PTC
Autodesk hq:San_Rafael start:1982 nasdaq:ADSK
BBN name:"BBN Technologies" deabbr:"Bolt, Beranek and Newman" hq:Cambridge_MA start:1948
Bell_Labs hq:Murray_Hill start:1925
Blizzard_Entertainment alt-id:Blizzard hq:Irvine start:1991
Blue_World_Communications hq:Fort_Lauderdale former-hq:Bellevue
Borland name:"Borland Software Corporation" hq:Austin start:1983 end:2009
Compaq hq:Harris_County start:1982 acquired-by:Hewlett-Packard:2013
Cortex
Cray_Inc former-name:"Cray Research" alt-id:Cray hq:Seattle start:1972
DEC name:"Digital Equipment Corporation" hq:Maynard start:1957
Digital_Mars founder:Walter_Bright
Digital_Research hq:Pacific_Grove start:1974 takeover-by:Novell:2001
Dropbox hq:San_Francisco start:2007
EMP_Inc name:"EMP Project Inc." hq:Naperville
Epic_Games hq:Cary start:1991
Facebook hq:Menlo_Park start:2004 founder:Mark_Zuckerberg
Firaxis_Games hq:Sparks start:1996
Fog_Creek_Software hq:New_York start:2000
General_Electric hq:Boston start:1892
Smallworld_Systems hq:Cambridge start:1989
Google hq:Menlo_Park start:1998
Guidewire_Software hq:Foster_City start:2001
Hewlett-Packard hq:Palo_Alto start:1939