From c97485891995701cfc2c5f88402433502777dc00 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Todor=20Kondi=C4=87?= <todor.kondic@uni.lu>
Date: Thu, 5 Mar 2020 10:50:43 +0100
Subject: [PATCH] Expand docs
---
README.org | 10 +++++++++-
1 file changed, 9 insertions(+), 1 deletion(-)
diff --git a/README.org b/README.org
index 1b1d43e..e1a0abe 100644
--- a/README.org
+++ b/README.org
@@ -79,7 +79,7 @@
to cause major installation issues.
To install the dependencies use the following script
#+BEGIN_SRC R
- BiocManager::install(c("curl","rsvg","enviPat","rJava", "fingerprint", "png", "rcdk","mzR","rcdklibs"), dependencies=TRUE))
+ BiocManager::install(c("curl","rsvg","enviPat","rJava", "fingerprint", "png", "rcdk","mzR","rcdklibs"), dependencies=TRUE)
#+END_SRC
The major issue in installing the dependencies is loading ~rjava~ library (essential rcdk functionality)
@@ -89,6 +89,14 @@
`C:\Program Files (x86)\Java`.
- Test if the library is loaded properly and proceed with the
installation of ~RMassBank~ and ~RChemMass~.
+ - To install ~RMassBank~,
+ #+BEGIN_SRC R
+ BiocManager::install("RMassBank") # .
+ #+END_SRC
+ - For ~RChemMass~,
+ #+BEGIN_SRC R
+ devtools::install_github("schymane/RChemMass") #.
+ #+END_SRC
Detailed explanation on how to tackle these problems is available
[[https://github.com/schymane/RChemMass/blob/master/README_installation.txt][here]].
--
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