diff --git a/README.org b/README.org index 1b1d43e68bd9b70bdb8e1157f38c4cae0ce23dfc..e1a0abe1bbfd5fc861637bedd7448dff233f9199 100644 --- a/README.org +++ b/README.org @@ -79,7 +79,7 @@ to cause major installation issues. To install the dependencies use the following script #+BEGIN_SRC R - BiocManager::install(c("curl","rsvg","enviPat","rJava", "fingerprint", "png", "rcdk","mzR","rcdklibs"), dependencies=TRUE)) + BiocManager::install(c("curl","rsvg","enviPat","rJava", "fingerprint", "png", "rcdk","mzR","rcdklibs"), dependencies=TRUE) #+END_SRC The major issue in installing the dependencies is loading ~rjava~ library (essential rcdk functionality) @@ -89,6 +89,14 @@ `C:\Program Files (x86)\Java`. - Test if the library is loaded properly and proceed with the installation of ~RMassBank~ and ~RChemMass~. + - To install ~RMassBank~, + #+BEGIN_SRC R + BiocManager::install("RMassBank") # . + #+END_SRC + - For ~RChemMass~, + #+BEGIN_SRC R + devtools::install_github("schymane/RChemMass") #. + #+END_SRC Detailed explanation on how to tackle these problems is available [[https://github.com/schymane/RChemMass/blob/master/README_installation.txt][here]].