diff --git a/R/shiny-ui-gen.R b/R/shiny-ui-gen.R new file mode 100644 index 0000000000000000000000000000000000000000..4154e878e61c0c19198f88abb745e00a60f6fad8 --- /dev/null +++ b/R/shiny-ui-gen.R @@ -0,0 +1,82 @@ +## Copyright (C) 2020 by University of Luxembourg + +## Licensed under the Apache License, Version 2.0 (the "License"); +## you may not use this file except in compliance with the License. +## You may obtain a copy of the License at + +## http://www.apache.org/licenses/LICENSE-2.0 + +## Unless required by applicable law or agreed to in writing, software +## distributed under the License is distributed on an "AS IS" BASIS, +## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +## See the License for the specific language governing permissions and +## limitations under the License. + +## Commentary: +## +## Defines gen tab. + + +mk_ui_gen <- function() { + genBoxExtract<-prim_box(title="Extract Spectra", + num_input(inputId="genNoProc", + label="Number of processes: ", + value=1), + num_input_unit(inputId="errCoarse", + l1="Precursor m/z error (coarse) (+/-): ", + l2="[Da]", + value=MS1_ERR_COARSE), + num_input_unit("errFinePPM", + l1="Precursor m/z error (fine) (+/-): ", + l2="[ppm]", + value=MS1_ERR_FINE), + num_input_unit("errEIC", + l1="EIC m/z error (+/-): ", + l2="[Da]", + value=EIC_ERR), + num_input_unit("errRTWin", + l1="Retention time tolerance (+/-): ", + l2="[min]", + value=RT_EXTR_ERR), + shiny::uiOutput("genSetSelInpCtrl"), + shiny::actionButton(inputId="genRunB", + label="Run!", + icon=shiny::icon("bomb")), + width=NULL) + + genBoxAutoQA<-prim_box(title="Automatic Quality Control", + num_input("intThreshMS1", + label="Intensity threshold (MS1): ", + value=MS1_INT_THOLD), + num_input("intThreshMS2", + label="Intensity threshold (MS2): ", + value=MS2_INT_THOLD), + num_input("noiseFac", + label="Signal-to-noise ratio: ", + value=MS1_SN_FAC), + num_input_unit("errRT", + l1="Retention time shift tolerance (+/-): ", + value=RT_SHIFT_ERR, + l2="[min]"), + shiny::actionButton(inputId="qaAutoB", + label="Preprocess!", + icon=shiny::icon("bomb")), + width=NULL) + + genBoxProcessed<-prim_box(title="Processed Sets", + rhandsontable::rHandsontableOutput("genTabProcCtrl"), + width=NULL) + + genTab<-shinydashboard::tabItem(tabName = "gen", + shiny::h2(GUI_TAB_TITLE[["gen"]]), + shiny::fluidRow(shiny::column(genBoxExtract, + width=4), + shiny::column(genBoxProcessed, + genBoxAutoQA,width=4))) + genSideItem <- shinydashboard::menuItem(text=GUI_SIDE_TITLE[["gen"]], + tabName="gen", + icon=shiny::icon("cogs")) + + return(list(tab=genTab, + side=genSideItem)) +}