diff --git a/man/empty_envopts.Rd b/man/empty_envopts.Rd index 0f024c2ec7dc36ecfec28db3d03b4c4d9c84c7f9..69fadfa23c5fd34b35aa635eb7e0ec184dc8d6c2 100644 --- a/man/empty_envopts.Rd +++ b/man/empty_envopts.Rd @@ -11,7 +11,8 @@ empty_envopts( metfrag_db_dir = NULL, metfrag_jar = NULL, java_bin = NULL, - metfrag_max_proc = NULL + metfrag_max_proc = NULL, + no_structure_plots = NULL ) } \arguments{ @@ -37,6 +38,9 @@ has been supplied, we will try to detect it.} \item{metfrag_max_proc}{\code{integer(1)}, maximum number of CPU cores available for MetFrag. If no number has been supplied, we will try to detect the number of logical CPUs and go with that.} + +\item{no_structure_plots}{\code{logical(1)}, if T, structures will not +be plotted, even when it is possibile.} } \value{ An \code{envopts} object. diff --git a/man/init.Rd b/man/init.Rd index 4d1c39493fbe572fbb571d91872f9563db6167b8..47933df5a0e03d2ef7af83f2210a0e10ba7ea37a 100644 --- a/man/init.Rd +++ b/man/init.Rd @@ -12,6 +12,7 @@ init( metfrag_jar = NULL, java_bin = NULL, metfrag_max_proc = NULL, + no_structure_plots = NULL, merge = T, save = F, conf_dir = tools::R_user_dir(package = "shinyscreen", which = "config") @@ -41,6 +42,9 @@ has been supplied, we will try to detect it.} available for MetFrag. If no number has been supplied, we will try to detect the number of logical CPUs and go with that.} +\item{no_structure_plots}{\code{logical(1)}, if T, structures will not +be plotted, even when it is possibile.} + \item{merge}{\code{logical(1)}, optional. If T, merge with saved configuration.}