diff --git a/R/mix.R b/R/mix.R index aa6a4d01fd1bea4836acac995009cf3c1afa2147..4f6537c186494dca1327ee3b16d3395e74b39a05 100644 --- a/R/mix.R +++ b/R/mix.R @@ -86,9 +86,10 @@ gen_comp_list<-function(src_fn,dest_fn) { ##' documentation of `msmsRead` for details. ##' @param archdir The directory to store R objects created during ##' workflow execution. +##' @param lastStep The last step in the workflow. Default is eight. ##' @return MsmsWorkspace object. ##' @author Todor Kondić -single.sw<-function(fn_data,stgs_alist,wd,fn_cmpd_list,mode,readMethod="mzR",archdir="archive") { +single.sw<-function(fn_data,stgs_alist,wd,fn_cmpd_list,mode,readMethod="mzR",archdir="archive",lastStep=8) { require(RMassBank) require(yaml)