From 2d4dbfa7bbf7739fc688ab2bbe6d53596f25455c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Todor=20Kondi=C4=87?= <todor.kondic@uni.lu>
Date: Mon, 1 Jul 2019 06:10:08 +0200
Subject: [PATCH] Update README.org
---
README.org | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/README.org b/README.org
index 964bb46..06b9fd7 100644
--- a/README.org
+++ b/README.org
@@ -5,7 +5,8 @@
** Prescreening
1. Generate prescreening data frames,
#+BEGIN_SRC R
- presc.do(list.files(patt=".*mzML"),"pH",fn_cmpd_list="./Pesticides.info.csv",proc=4)
+ presc.do(list.files(path="~/ECI_SCRATCH/20190627_HEROBER",patt=".*.mzML",full.names=T),
+ mode="pH",fn_cmpd_l="./cutlist.csv",proc=F,dest=".")
#+END_SRC
This is to be carried out inside the directory containing the
~mzML~ files. For sequential execution, leave out the ~proc~
@@ -13,7 +14,7 @@
2. Plot,
#+BEGIN_SRC R
require(rmbmix)
- presc.plot(normalizePath(list.dirs(".",recursive=F,full.names=F)))
+ presc.plot(list.files(".",patt="2.*POS",include.dirs=T),cex=0.7,digits=4)
#+END_SRC
The only argument is a sequence of absolute paths to directories
containing the prescreen data. The resulting plot file is going
--
GitLab