Commit ea112d69 authored by Emma Schymanski's avatar Emma Schymanski
Browse files

updated link

parent d769db33
......@@ -102,7 +102,7 @@ that are relevant, it is possible to download these directly
```{r download chemicals}
url_path <- "https://pubchem.ncbi.nlm.nih.gov/assay/pcget.cgi?task=pathway_chemical&taxid=6239&start=1&limit=10000000&download=true&downloadfilename=TaxID_6239_pcget_pathway_chemical"
# temporary fix, download an archived version
url_path2 <- "https://gitlab.lcsb.uni.lu/eci/pubchem-docs/-/raw/main/taxonomy/TaxID_6239_pcget_pathway_chemical_trim.csv"
url_path2 <- "https://gitlab.lcsb.uni.lu/eci/pubchem-docs/-/raw/main/taxonomy/Celegans/TaxID_6239_pcget_pathway_chemical_trim.csv"
url_wormjam <- "https://pubchem.ncbi.nlm.nih.gov/sdq/sdqagent.cgi?infmt=json&outfmt=csv&query={%22download%22:%22*%22,%22collection%22:%22norman_wormjam%22,%22where%22:{%22ands%22:[{%22taxid%22:%226239%22}]},%22order%22:[%22relevancescore,desc%22],%22start%22:1,%22limit%22:10000000,%22downloadfilename%22:%22TaxID_6239_norman_wormjam%22}"
......
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