guix: PCL reduced set

files/etc/guix_manifest_pcl.scm

+(use-modules (guix packages)
+	     (guix profiles)
+	     (gnu packages)
+	     (srfi srfi-1))
+
+
+
+(specifications->manifest       
+ '( ;; Utilities
+   "curl"
+   "git"
+   "git:send-email"
+   "subversion"
+   "bash"
+   "nano"
+   "nss-certs"
+   "glibc-locales"
+   "gcc-toolchain"
+   "gfortran-toolchain"
+   "python"
+   "perl"
+   "htop"
+   "pigz"
+
+
+   ;; Autotools
+   "autoconf"
+   "automake"
+   "autobuild"
+   "m4"
+
+   ;;Python
+   "python-requests"
+   "python-ruamel.yaml"
+   "python-matplotlib"
+   "python-numpy"
+   "python-scipy"
+
+   ;; Java
+   "openjdk:out"
+   "openjdk:jdk"
+   ;; Perl
+   "perl-yaml-libyaml"
+
+   ;; Guile
+   "guile-readline"
+
+   ;; R
+   "r"
+   "r-curl"
+   "r-ellipsis"
+   "r-remoter"
+   "r-sass"
+   "r-bslib"
+   "r-cachem"
+   "r-future"
+   "r-rmarkdown"
+   "r-knitr"
+   "r-roxygen2"
+   "r-rcolorbrewer"
+   "r-data-table"
+   "r-gplots"
+   "r-devtools"
+   "r-usethis"
+   "r-shiny"
+   "r-shinyfiles"
+   "r-shinydashboard"
+   "r-flexdashboard"
+   "r-handsontable"
+   "r-shinyfiles"
+   "r-cowplot"
+   "r-withr"
+   "r-massbank"
+   "r-chemmass"
+   "r-resolution"
+   "r-msnbase"
+   "r-pander"
+   "r-rstatix"
+   "r-shinyscreen"))

files/home/user/.local/bin/ansible-on-guix

@@ -9,4 +9,4 @@ env -i HOME="$HOME"\
        TERM="$TERM"\
        PATH=/usr/local/sbin/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin\
     bash -c "source  '$HOME'/.man-guix-prof/etc/profile
-             '$HOME'/.man-guix-prof/bin/ansible"
+             '$HOME'/.man-guix-prof/bin/ansible $@"

files/home/user/.local/bin/ansible-playbook-on-guix

@@ -9,4 +9,4 @@ env -i HOME="$HOME"\
        TERM="$TERM"\
        PATH=/usr/local/sbin/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin\
     bash -c "source  '$HOME'/.man-guix-prof/etc/profile
-             '$HOME'/.man-guix-prof/bin/ansible-playbook"
+             '$HOME'/.man-guix-prof/bin/ansible-playbook $@"

files/home/user/.local/bin/bash-on-guix

+#!/bin/sh
+
+# Clear environment, source the profile containing the new shinyscreen
+# and run it.
+
+env -i HOME="$HOME"\
+       USER="$USER"\
+       DISPLAY=":50"\
+       TERM="$TERM"\
+       PATH=/usr/local/sbin/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin\
+    bash -c "source  '$HOME'/.man-guix-prof/etc/profile;bash"
+

tasks/guix.yml

@@ -44,9 +44,16 @@
     dest: /etc/guix_manifest.scm
   tags: guix-inst-pkg
 
-- name: Install packages.
+- name: Copy package manifest (PCL).
+  copy:
+    src: files/etc/guix_manifest_pcl.scm
+    dest: /etc/guix_manifest_pcl.scm
+  tags: guix-inst-pkg
+
+
+- name: Install PCL packages.
   command:
-    cmd: /usr/bin/bash -l -c 'guix package -c8 -m /etc/guix_manifest.scm --fallback -p ~/.man-guix-prof'
+    cmd: guix package -c8 -m /etc/guix_manifest_pcl.scm --fallback -p ~/.man-guix-prof
   tags: guix-inst-pkg
   become_user: "{{ item.login }}"
   retries: 20
@@ -55,12 +62,23 @@
   until: result.rc == 0
   loop: "{{ users }}"
 
-# - name: Install guix managed programs.
-#   tags: guix-copy-bin
-#   copy:
-#     src: files/home/user/.local/bin/
-#     dest: "/home/{{ item.login }}/.local/bin"
-#     mode: '0744'
-#     owner: "{{ item.login }}"
-#     group: "{{ item.login }}"
+# - name: Install packages.
+#   command:
+#     cmd: /usr/bin/bash -l -c 'guix package -c8 -m /etc/guix_manifest_pcl.scm --fallback -p ~/.man-guix-prof'
+#   tags: guix-inst-pkg
+#   become_user: "{{ item.login }}"
+#   retries: 20
+#   delay: 5
+#   register: result
+#   until: result.rc == 0
 #   loop: "{{ users }}"
+
+- name: Install guix managed programs.
+  tags: guix-copy-bin
+  copy:
+    src: files/home/user/.local/bin/
+    dest: "/home/{{ item.login }}/.local/bin"
+    mode: '0744'
+    owner: "{{ item.login }}"
+    group: "{{ item.login }}"
+  loop: "{{ users }}"