Commit a1ff2df5 authored by Dimitrios Kyriakis's avatar Dimitrios Kyriakis
Browse files

No commit message

No commit message
parent 507b9f30
......@@ -36,7 +36,7 @@ EBs are cells at an early stage of spontaneous differentiation. Scorecard analys
## Libraries
<details><summary>Code</summary>
<p>
```{r libraries, include=FALSE}
```r
library(reticulate)
use_python("C:/Users/dimitrios.kyriakis/AppData/Local/Continuum/anaconda3/envs/iscwrapper/python.exe", required = TRUE)
options(future.globals.maxSize= 2122317824)
......@@ -63,7 +63,7 @@ set.seed(123)
## Setting Up
<details><summary>Code</summary>
<p>
```{r setup}
```r
# ================================ SETTING UP ======================================== #
tool="seurat"
project ="Michi_Data"
......@@ -105,7 +105,7 @@ Additional to this filtering, we defined cells as low-quality, based on three cr
<details><summary>Code</summary>
<p>
```{r readfiles}
```r
# ======== Perform an integrated analysis ====
NewDir <- paste0(Sys.Date(),"_",tool,"_elbow_",elbow,"_Mito-",remove_mt,"_Ribo-",remove_ribsomal,"_SCT-",SCT,"_criteria_pass-",criteria_pass)
dir.create(NewDir)
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment