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Commit 11790b1d authored by Dimitrios Kyriakis's avatar Dimitrios Kyriakis
Browse files

Session

parent 89c8073f
# PINK1 shows LRRK2, Parkin, and SNCA as part of the Parkinson’s network.
# Authors
Gabriela Novak, Dimitrios Kyriakis, Kamil Grzyb, Michela Bernini, Alexander Skupin
# Abstract
......@@ -435,3 +437,78 @@ setwd("../")
```
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</details>
## Session Info
<details><summary>Code</summary>
<p>
```r
R version 3.6.2 (2019-12-12)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] grid stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] gridBase_0.4-7 VennDiagram_1.6.20 futile.logger_1.4.3
[4] gridExtra_2.3 viridis_0.5.1 viridisLite_0.3.0
[7] forcats_0.5.0 dplyr_0.8.5 purrr_0.3.3
[10] readr_1.3.1 tidyr_1.0.2 tibble_3.0.0
[13] tidyverse_1.3.0 cowplot_1.0.0 ggpubr_0.2.5
[16] magrittr_1.5 ggplot2_3.3.0 NMF_0.22.0
[19] rngtools_1.5 pkgmaker_0.31.1 registry_0.5-1
[22] garnett_0.2.9 monocle3_0.2.1.5 SingleCellExperiment_1.8.0
[25] SummarizedExperiment_1.16.1 DelayedArray_0.12.3 BiocParallel_1.20.1
[28] matrixStats_0.56.0 GenomicRanges_1.38.0 GenomeInfoDb_1.22.1
[31] IRanges_2.20.2 S4Vectors_0.24.4 Biobase_2.46.0
[34] BiocGenerics_0.32.0 cluster_2.1.0 jcolors_0.0.4
[37] Routliers_0.0.0.3 stringr_1.4.0 crayon_1.3.4
[40] tictoc_1.0 RColorBrewer_1.1-2 Seurat_3.1.5
[43] sctransform_0.2.1 reticulate_1.15
loaded via a namespace (and not attached):
[1] readxl_1.3.1 backports_1.1.6 plyr_1.8.6 igraph_1.2.5
[5] lazyeval_0.2.2 splines_3.6.2 listenv_0.8.0 digest_0.6.23
[9] foreach_1.5.0 htmltools_0.4.0 gdata_2.18.0 fansi_0.4.1
[13] doParallel_1.0.15 ROCR_1.0-7 globals_0.12.5 modelr_0.1.6
[17] prettyunits_1.1.1 colorspace_1.4-1 rvest_0.3.5 ggrepel_0.8.2
[21] haven_2.2.0 RCurl_1.98-1.1 jsonlite_1.6 graph_1.64.0
[25] survival_3.1-11 zoo_1.8-7 iterators_1.0.12 ape_5.3
[29] glue_1.4.0 gtable_0.3.0 zlibbioc_1.32.0 XVector_0.26.0
[33] leiden_0.3.3 future.apply_1.4.0 abind_1.4-5 scales_1.1.0
[37] futile.options_1.0.1 DBI_1.1.0 bibtex_0.4.2.2 Rcpp_1.0.4.6
[41] xtable_1.8-4 progress_1.2.2 rsvd_1.0.3 tsne_0.1-3
[45] htmlwidgets_1.5.1 httr_1.4.1 gplots_3.0.3 ellipsis_0.3.0
[49] ica_1.0-2 farver_2.0.3 pkgconfig_2.0.3 uwot_0.1.8
[53] dbplyr_1.4.2 labeling_0.3 tidyselect_1.0.0 rlang_0.4.5
[57] reshape2_1.4.3 cellranger_1.1.0 munsell_0.5.0 tools_3.6.2
[61] cli_2.0.2 generics_0.0.2 broom_0.5.5 ggridges_0.5.2
[65] npsurv_0.4-0 fs_1.4.1 fitdistrplus_1.0-14 caTools_1.18.0
[69] RANN_2.6.1 pbapply_1.4-2 future_1.16.0 nlme_3.1-145
[73] formatR_1.7 xml2_1.3.1 compiler_3.6.2 rstudioapi_0.11
[77] plotly_4.9.2.1 png_0.1-7 lsei_1.2-0 ggsignif_0.6.0
[81] reprex_0.3.0 stringi_1.4.6 lattice_0.20-41 Matrix_1.2-18
[85] vctrs_0.2.4 pillar_1.4.3 lifecycle_0.2.0 lmtest_0.9-37
[89] RcppAnnoy_0.0.16 data.table_1.12.8 bitops_1.0-6 irlba_2.3.3
[93] patchwork_1.0.0.9000 R6_2.4.1 KernSmooth_2.23-16 codetools_0.2-16
[97] lambda.r_1.2.4 MASS_7.3-51.5 gtools_3.8.2 assertthat_0.2.1
[101] MAST_1.12.0 withr_2.1.2 GenomeInfoDbData_1.2.2 hms_0.5.3
[105] ICSWrapper_0.2.2 Rtsne_0.15 lubridate_1.7.8
```
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</details>
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