Commits · 1645df378870b512e9aa904459232a53cc4b10c8 · Devrim Gunyel / core

28 Jun, 2019 9 commits
- Merge branch '845-error-when-exporting-an-sbml-file-to-graphics' into 'master' · 1645df37
  Piotr Gawron authored Jun 28, 2019
```
Resolve "Error when exporting an SBML file to graphics"

Closes #845

See merge request !825
```
  1645df37
- drawing reaction with center line consisted of 3 points raised exception · 2f619e3c
  Piotr Gawron authored Jun 28, 2019
  
  2f619e3c
- Merge branch '839-for-some-reactions-reaction-lines-in-sbml-and-celldesigner-differ' into 'master' · 330d03d9
  Piotr Gawron authored Jun 28, 2019
```
Resolve "For some reactions, reaction lines in SBML and CellDesigner differ"

Closes #839

See merge request minerva/core!821
```
  330d03d9
- ignore layout of the reaction when comparing maps after serailzation · ce86f215
  Piotr Gawron authored Jun 28, 2019
  
  ce86f215
- ignore reaction layout when comparing data after serialization · 46ae8a47
  Piotr Gawron authored Jun 28, 2019
  
  46ae8a47
- allow to ignore layout of reactions when comparing them · 1185072e
  Piotr Gawron authored Jun 28, 2019
  
  1185072e
- only export of reduced notation reaction can be represented as boolean logic gate · 21ef1dd8
  Piotr Gawron authored Jun 28, 2019
  
  21ef1dd8
- line is exported to celldesigner properly when center line is not colinear with product/reactant · 57d919fc
  Piotr Gawron authored Jun 28, 2019
  
  57d919fc
- js files are generated and copied in the right order · eb3e07ea
  Piotr Gawron authored Jun 28, 2019
  
  eb3e07ea
27 Jun, 2019 5 commits
- Merge branch 'merge-13.1.0' into 'master' · bc1937ba
  Piotr Gawron authored Jun 27, 2019
```
Merge 13.1.0

See merge request minerva/core!824
```
  bc1937ba
- Merge remote-tracking branch 'origin/devel_13.1.x' into merge-13.1.0 · b2d45f06
  Piotr Gawron authored Jun 27, 2019
  
  b2d45f06
- Merge branch 'changelog' into 'devel_13.1.x' · b2b9808d
  Piotr Gawron authored Jun 27, 2019
```
Changelog

See merge request !823
```
  b2b9808d
- changelog for version 13.1.0 · 551bb76c
  Piotr Gawron authored Jun 27, 2019
  
  551bb76c
- Merge branch 'devel_13.1.x' of https://git-r3lab.uni.lu/minerva/core into devel_13.1.x · 61ed3fa6
  Piotr Gawron authored Jun 27, 2019
  
  61ed3fa6
21 Jun, 2019 2 commits
- Merge branch 'unit-test-issue' into 'master' · ea956483
  Piotr Gawron authored Jun 21, 2019
```
make sure that test clean after itself

See merge request !822
```
  ea956483
- make sure that test clean after itself · 3167e809
  Piotr Gawron authored Jun 21, 2019
  
  3167e809
17 Jun, 2019 2 commits
- Merge branch 'identifier-org-new-interface' into 'master' · 7cbd4bed
  Piotr Gawron authored Jun 17, 2019
```
identifiers org changed the api

See merge request !820
```
  7cbd4bed
- identifiers org changed the api · 4bdce60e
  Piotr Gawron authored Jun 17, 2019
  
  4bdce60e
14 Jun, 2019 10 commits
- Merge branch... · 8410e0de
  Piotr Gawron authored Jun 14, 2019
```
Merge branch '668-coordinates-of-context-menu-should-be-taken-from-the-event-not-guiconnector' into 'master'

Resolve "coordinates of context menu should be taken from the event not GuiConnector"

Closes #668

See merge request !819
```
  8410e0de
- when triggering click event manually provide required data · 12c2f91d
  Piotr Gawron authored Jun 14, 2019
  
  12c2f91d
- reference window as a global object · 847d19f6
  Piotr Gawron authored Jun 14, 2019
  
  847d19f6
- unused parameter removed · dd0868b4
  Piotr Gawron authored Jun 14, 2019
  
  dd0868b4
- unused method removed · bbc9631c
  Piotr Gawron authored Jun 14, 2019
  
  bbc9631c
- reference to nonexisting fields removed · f2baeae6
  Piotr Gawron authored Jun 14, 2019
  
  f2baeae6
- mouse coordinates are not stored in GuiConnector · 1b996003
  Piotr Gawron authored Jun 14, 2019
  
  1b996003
- long click rellies on event coordinates · c3574d6c
  Piotr Gawron authored Jun 14, 2019
  
  c3574d6c
- shape-rightclick doesn't relly on GuiConnextor.xPos · ca7e31fb
  Piotr Gawron authored Jun 14, 2019
  
  ca7e31fb
- GuiConnector pos removed from rightclick handler · d4b9d0a5
  Piotr Gawron authored Jun 14, 2019
  
  d4b9d0a5
13 Jun, 2019 9 commits
- Merge branch '794-boolean-logic-gate-coerced-to-the-single-type' into 'master' · f6171739
  Piotr Gawron authored Jun 13, 2019
```
Resolve "Boolean logic gate coerced to the single type"

Closes #794

See merge request minerva/core!818
```
  f6171739
- automatic layout should be enforced if any line is empty · e36883ec
  Piotr Gawron authored Jun 13, 2019
  
  e36883ec
- export to CellDesigner GateReaction is also based on the geometry of the reaction lines · c1b47007
  Piotr Gawron authored Jun 13, 2019
  
  c1b47007
- export of boolean logic gate fixed · 29f71453
  Piotr Gawron authored Jun 13, 2019
  
  29f71453
- remove BooleanLogicGateReaction reaction type · 3da898c0
  Piotr Gawron authored Jun 13, 2019
  
  3da898c0
- remove all boolean logic gate reactions · 494f049b
  Piotr Gawron authored Jun 13, 2019
  
  494f049b
- Merge branch '215-inconsistent-results-from-reverse-search-for-drug-mirna-targets' into 'master' · 081403b6
  Piotr Gawron authored Jun 13, 2019
```
Resolve "Inconsistent results from reverse search for drug/miRNA targets"

Closes #215

See merge request !817
```
  081403b6
- search by target didn't work if target was annotated automatically · f78a495d
  Piotr Gawron authored Jun 13, 2019
  
  f78a495d
- imports organized · 89c320bf
  Piotr Gawron authored Jun 13, 2019
  
  89c320bf
12 Jun, 2019 3 commits
- Merge branch '66-mirna-target-interface-entrez-vs-gene-name-link' into 'master' · 9f5b78b7
  Piotr Gawron authored Jun 12, 2019
```
Resolve "miRNA target interface: Entrez vs Gene name link"

Closes #66

See merge request !816
```
  9f5b78b7
- target gene contains also information about type of database · c87802f1
  Piotr Gawron authored Jun 12, 2019
  
  c87802f1
- mirna targets are filtered by organism · 087591b4
  Piotr Gawron authored Jun 12, 2019
  
  087591b4