Commits · 00130dba29ed9561b0e1b21b7fd174e6aee217e5 · Devrim Gunyel / core

06 Nov, 2019 1 commit
- problem with reactome sbgn product layout fixed · 00130dba
  Piotr Gawron authored Nov 06, 2019
  
  00130dba
05 Nov, 2019 14 commits
- Merge branch '938-gaps-in-reaction-lines-after-conversion-to-sbml-from-sbgn' into 'master' · 0db0594e
  Piotr Gawron authored Nov 05, 2019
```
Resolve "Gaps in reaction lines after conversion to SBML from SBGN"

Closes #938

See merge request minerva/core!997
```
  0db0594e
- export of model with invalid model id doesn't break export to sbml · ce447a66
  Piotr Gawron authored Nov 05, 2019
  
  ce447a66
- Merge branch '930-uppercase-line-break-tags-in-sbgn-export' into 'master' · 1deccb1f
  Piotr Gawron authored Nov 05, 2019
```
Resolve "Uppercase line break tags in SBGN export"

Closes #930

See merge request minerva/core!996
```
  1deccb1f
- export to CellDesigner properly handles new line characters · 0ea35cb7
  Piotr Gawron authored Nov 05, 2019
  
  0ea35cb7
- Merge branch '995-some-modifiers-not-transferred-from-sbgn-ml' into 'master' · 8fd36e0a
  Piotr Gawron authored Nov 05, 2019
```
Resolve "Some modifiers not transferred from SBGN-ML"

Closes #995

See merge request minerva/core!995
```
  8fd36e0a
- clear button icon, refresh comments button and show overview button icons were missing · b6c9ea26
  Piotr Gawron authored Nov 05, 2019
  
  b6c9ea26
- import of structural state added · feb9892f
  Piotr Gawron authored Nov 05, 2019
  
  feb9892f
- Merge branch '836-remember-user-parameters-for-sorting-table-in-admin-panel' into 'master' · 7a5f3553
  Piotr Gawron authored Nov 05, 2019
```
Resolve "Remember user parameters for sorting table in Admin Panel"

Closes #836

See merge request minerva/core!994
```
  7a5f3553
- common code extracted to separate function · 2cc2a511
  Piotr Gawron authored Nov 05, 2019
  
  2cc2a511
- common functionality exrtacted to separate method · 4f3bb3e2
  Piotr Gawron authored Nov 05, 2019
  
  4f3bb3e2
- order in databasle is preserved in user preferences · 242a377a
  Piotr Gawron authored Nov 05, 2019
  
  242a377a
- unused code removed · 4e9c3f5e
  Piotr Gawron authored Nov 05, 2019
  
  4e9c3f5e
- global variable is not used · 3ecd7e34
  Piotr Gawron authored Nov 05, 2019
  
  3ecd7e34
- sort order of map-tables is preserved in user preferences · b1851ccf
  Piotr Gawron authored Nov 05, 2019
  
  b1851ccf
04 Nov, 2019 4 commits
- Merge branch 'gpml-mapping-change' into 'master' · 931fe08b
  Piotr Gawron authored Nov 04, 2019
```
mapping modified - input arrow is translated into reactant not a modulation

See merge request minerva/core!993
```
  931fe08b
- mapping modified - input arrow is translated into reactant not a modulation · 9cfcdbaa
  Piotr Gawron authored Nov 04, 2019
  
  9cfcdbaa
- Merge branch 'gpml-logging' into 'master' · e3faa81c
  Piotr Gawron authored Nov 04, 2019
```
Gpml logging added

See merge request minerva/core!992
```
  e3faa81c
- Merge branch 'migration-script-version' into 'master' · a5d86a8f
  Piotr Gawron authored Nov 04, 2019
```
migration script version was invalid

See merge request minerva/core!991
```
  a5d86a8f
31 Oct, 2019 9 commits
- db scripts moved to the proper alpha release directory · 0d1f5e85
  Piotr Gawron authored Oct 31, 2019
  
  0d1f5e85
- gpml parser provides structured logs · f6ffd3b9
  Piotr Gawron authored Oct 31, 2019
  
  f6ffd3b9
- migration script version was invalid · 41a9a832
  Piotr Gawron authored Oct 31, 2019
  
  41a9a832
- Merge branch 'gpml-prototype' into 'master' · 2e6c58ec
  Piotr Gawron authored Oct 31, 2019
```
Gpml prototype

Closes #959

See merge request minerva/core!990
```
  2e6c58ec
- export of z index for reactions added · 6eda7ed1
  Piotr Gawron authored Oct 31, 2019
  
  6eda7ed1
- unused functions removed · a096aa33
  Piotr Gawron authored Oct 31, 2019
  
  a096aa33
- changelog updated · 6182114f
  Piotr Gawron authored Oct 31, 2019
  
  6182114f
- extraction of layout from gpml improved · d866a7a6
  Piotr Gawron authored Oct 31, 2019
  
  d866a7a6
- toString could return NPE · d4dfed17
  Piotr Gawron authored Oct 31, 2019
  
  d4dfed17
30 Oct, 2019 4 commits
- export to gpml uses proper colors · 0b36888f
  Piotr Gawron authored Oct 30, 2019
  
  0b36888f
- Merge branch '982-add-an-icon-next-to-locker-icon-in-userview-to-enter-admin-panel' into 'master' · 16327644
  Piotr Gawron authored Oct 30, 2019
```
Resolve "Add an icon next to locker icon in USERview to enter admin panel"

Closes #982

See merge request minerva/core!988
```
  16327644
- serialization over celldesigner should ignore font colors · effb0b26
  Piotr Gawron authored Oct 30, 2019
  
  effb0b26
- debug message improved · 55462871
  Piotr Gawron authored Oct 30, 2019
  
  55462871
29 Oct, 2019 8 commits
- list of converters is resolved based on spring components · eb4c8102
  Piotr Gawron authored Oct 29, 2019
  
  eb4c8102
- Merge remote-tracking branch 'origin/master' into gpml-prototype · 525fc054
  Piotr Gawron authored Oct 29, 2019
  
  525fc054
- unit test fixed · b0553187
  Piotr Gawron authored Oct 29, 2019
  
  b0553187
- changelog updated · bc829e35
  Piotr Gawron authored Oct 29, 2019
  
  bc829e35
- login link in eader separted from access admin panel link · a2f8abd1
  Piotr Gawron authored Oct 29, 2019
  
  a2f8abd1
- upgrade to fa 5.1 · 01cf86f2
  Piotr Gawron authored Oct 29, 2019
  
  01cf86f2
- Merge branch '326-re-organize-compartments-in-the-generated-layout' into 'master' · f67c36ac
  Piotr Gawron authored Oct 29, 2019
```
Resolve "Re-organize compartments in the generated layout"

Closes #326

See merge request minerva/core!987
```
  f67c36ac
- comaprtments are more scattered · 8c0a96c8
  Piotr Gawron authored Oct 29, 2019
  
  8c0a96c8