import of compartment border color works as before

pathvisio/src/main/java/lcsb/mapviewer/wikipathway/XML/ModelContructor.java

@@ -456,31 +456,34 @@ public class ModelContructor {
    *
    * @param gpmlElement
    *          object from which alias will be create
-   * @param alias
-   *          specie for which alias will be created
+   * @param element
+   *          element for which alias will be created
    * @return {@link Species} created from input {@link Label}
    */
-  public Element updateAlias(GraphicalPathwayElement gpmlElement, Element alias) {
-    if (alias instanceof Compartment) {
+  public Element updateAlias(GraphicalPathwayElement gpmlElement, Element element) {
+    if (element instanceof Compartment) {
       if (((Shape) gpmlElement).getShape().equalsIgnoreCase("oval")) {
-        alias = new OvalCompartment((Compartment) alias);
+        element = new OvalCompartment((Compartment) element);
       } else {
-        alias = new SquareCompartment((Compartment) alias);
+        element = new SquareCompartment((Compartment) element);
       }
       String name = ((Shape) gpmlElement).getTextLabel();
       if (name == null) {
         name = "";
       }
-      alias.setName(name);
+      element.setName(name);
     }
 
     Rectangle2D rec = gpmlElement.getRectangle();
-    alias.setX(rec.getX());
-    alias.setY(rec.getY());
-    alias.setWidth((int) rec.getWidth());
-    alias.setHeight((int) rec.getHeight());
-    alias.setFillColor(gpmlElement.getFillColor());
-    return alias;
+    element.setX(rec.getX());
+    element.setY(rec.getY());
+    element.setWidth((int) rec.getWidth());
+    element.setHeight((int) rec.getHeight());
+    element.setFillColor(gpmlElement.getFillColor());
+    if (element instanceof Compartment) {
+      element.setBorderColor(gpmlElement.getFillColor());
+    }
+    return element;
   }
 
   /**