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Devrim Gunyel
core
Commits
a29e4489
Commit
a29e4489
authored
Mar 26, 2019
by
Piotr Gawron
Browse files
change in reactome database
parent
7d2837a6
Changes
4
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Inline
Side-by-side
reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceGeneProductParserTest.java
View file @
a29e4489
...
...
@@ -53,7 +53,7 @@ public class ReactomeReferenceGeneProductParserTest extends ReactomeTestFunction
assertEquals
((
Integer
)
2
,
res
.
getReferenceDatabase
().
getDbId
());
assertEquals
((
Integer
)
48895
,
res
.
getSpecies
().
getDbId
());
assertEquals
((
Integer
)
1
1373937
,
res
.
getReferenceGenes
().
get
(
0
).
getDbId
());
assertEquals
((
Integer
)
1
0586616
,
res
.
getReferenceGenes
().
get
(
0
).
getDbId
());
}
catch
(
Exception
e
)
{
e
.
printStackTrace
();
...
...
reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceIsoformParserTest.java
View file @
a29e4489
...
...
@@ -39,7 +39,7 @@ public class ReactomeReferenceIsoformParserTest extends ReactomeTestFunctions {
assertEquals
((
Integer
)
2
,
res
.
getReferenceDatabase
().
getDbId
());
assertEquals
(
"false"
,
res
.
getIsSequenceChanged
());
assertEquals
((
Integer
)
48887
,
res
.
getSpecies
().
getDbId
());
assertEquals
((
Integer
)
1
1373937
,
res
.
getReferenceGenes
().
get
(
0
).
getDbId
());
assertEquals
((
Integer
)
1
0586616
,
res
.
getReferenceGenes
().
get
(
0
).
getDbId
());
assertEquals
((
Integer
)
192971
,
res
.
getReferenceTranscripts
().
get
(
0
).
getDbId
());
assertEquals
((
Integer
)
402286
,
res
.
getIsoformParents
().
get
(
0
).
getDbId
());
assertEquals
(
"UniProt:P02545-1 LMNA"
,
res
.
getDisplayName
());
...
...
reactome/testFiles/reactome/referenceGeneProduct.xml
View file @
a29e4489
...
...
@@ -20,7 +20,7 @@
<schemaClass>
Species
</schemaClass>
</species>
<referenceGene>
<dbId>
1
1373937
</dbId>
<dbId>
1
0586616
</dbId>
<displayName>
BioGPS Gene:1 A1BG
</displayName>
<schemaClass>
ReferenceDNASequence
</schemaClass>
</referenceGene>
...
...
reactome/testFiles/reactome/referenceIsoform.xml
View file @
a29e4489
...
...
@@ -382,7 +382,7 @@
<schemaClass>
Species
</schemaClass>
</species>
<referenceGene>
<dbId>
1
1373937
</dbId>
<dbId>
1
0586616
</dbId>
<displayName>
BioGPS Gene:1 A1BG
</displayName>
<schemaClass>
ReferenceDNASequence
</schemaClass>
</referenceGene>
...
...
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