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Devrim Gunyel
core
Commits
3d3e5267
Commit
3d3e5267
authored
Aug 12, 2019
by
Piotr Gawron
Browse files
force upgrade of tomcat to at least tomcat8
parent
9b0ec4c8
Changes
3
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CHANGELOG
View file @
3d3e5267
minerva
(
14.0.0
~
alpha
.1
)
unstable
;
urgency
=
low
*
Small
improvement
:
debian
package
can
be
installed
on
debian
:
buster
(#
879
)
*
Feature
removal
:
support
for
tomcat7
removed
(#
828
)
--
Piotr
Gawron
<
piotr
.
gawron
@
uni
.
lu
>
Mon
,
12
Aug
2019
10
:
00
:
00
+
0200
minerva
(
14.0.0
~
alpha
.0
)
unstable
;
urgency
=
low
*
Feature
:
security
layer
redesigned
-
privilge
types
and
scope
changed
*
Feature
:
security
layer
redesigned
-
privil
e
ge
types
and
scope
changed
(#
636
,
#
624
)
*
Feature
:
log4j
is
replaced
with
log4j2
logging
mechanism
(#
291
)
*
Feature
:
database
installed
via
debian
package
is
done
via
dbconfig
-
commons
(#
469
)
*
Feature
:
Replaced
connection
pool
manager
C3P0
with
better
maintained
Hikari
(#
564
)
Hikari
-
restart
of
postgresql
database
doesn
't require restart of tomcat
(#564)
* Feature removal: BioCompendium annotator removed (#32)
* Small improvement: anonymous login is no longer required - each API query
outside session is authorized with anonymous user privileges (#629)
...
...
@@ -24,9 +31,8 @@ minerva (14.0.0~alpha.0) unstable; urgency=low
overlay is now deprecated (#850)
* Small improvement: information about deprecated columns in data overlay is
visible in overlay list (#838)
*
Small
improvement
:
publication
list
is
resizable
(#
740
)
* Small improvement: publication list is resiz
e
able (#740)
* Small improvement: user list on project edit dialog is sortable (#808)
*
Small
improvement
:
debian
package
can
be
installed
on
debian
:
buster
(#
879
)
* Bug fix: export to CellDesigner of reaction with two modifiers connected
with boolean operator resulted was skipping some layout information
* Bug fix: reaction in SBGNML file containing two products was improperly
...
...
@@ -40,14 +46,14 @@ minerva (14.0.0~alpha.0) unstable; urgency=low
* Bug fix: Search drug by target element did not return values when this
element was annotated automatically (#216)
--
Piotr
Gawron
<
piotr
.
gawron
@
uni
.
lu
>
Fri
,
09
Aug
2019
10
:
00
:
00
+
0200
-- Piotr Gawron <piotr.gawron@uni.lu>
Fri, 09 Aug 2019 10:00:00 +0200
minerva (13.1.2) stable; urgency=medium
* Bug fix: Information about problematic zip file is more specific (#865)
* Bug fix: Url didn'
t
contain
list
of
opened
plugins
and
they
weren
't reload
automatically on refresh (#866)
--
Piotr
Gawron
<
piotr
.
gawron
@
uni
.
lu
>
Mon
,
22
Jul
2019
17
:
00
:
00
+
0200
-- Piotr Gawron <piotr.gawron@uni.lu>
Mon, 22 Jul 2019 17:00:00 +0200
minerva (13.1.1) stable; urgency=medium
* Bug fix: adding gene mapping before the genome caused an error (#835)
...
...
debian/template/control
View file @
3d3e5267
...
...
@@ -15,4 +15,5 @@ Description: Standalone web application for visualization, exploration and
Section: science
Homepage: http://r3lab.uni.lu/web/minerva-website/
Recommends: postgresql (>=9.3)
Depends: ${misc:Depends}, openjdk-8-jre-headless | openjdk-11-jre-headless, dbconfig-pgsql | dbconfig-no-thanks, tomcat7 | tomcat8 |tomcat9
Breaks: tomcat7
Depends: ${misc:Depends}, openjdk-8-jre-headless | openjdk-11-jre-headless, web | dbconfig-no-thanks, tomcat8 |tomcat9
debian/template/postinst
View file @
3d3e5267
...
...
@@ -82,6 +82,19 @@ case "$1" in
rm
-rf
/var/lib/
$TOMCAT_PACKAGE
/webapps/minerva
ln
-sf
/usr/share/minerva/minerva.war /var/lib/
$TOMCAT_PACKAGE
/webapps/minerva.war
invoke-rc.d
$TOMCAT_PACKAGE
start
#minerva prior to 14.0 could be installed on tomcat7, we need to migrate files from such version to current one
if
[
-d
"/var/lib/tomcat7/webapps/map_images/"
]
;
then
log
"moving '/var/lib/tomcat7/webapps/map_images/' -> '/var/lib/
$TOMCAT_PACKAGE
/webapps/map_images/'"
;
mv
/var/lib/tomcat7/webapps/map_images/ /var/lib/
$TOMCAT_PACKAGE
/webapps/map_images/
chown
-R
$TOMCAT_PACKAGE
:
$TOMCAT_PACKAGE
/var/lib/
$TOMCAT_PACKAGE
/webapps/map_images/
fi
if
[
-d
"/var/lib/tomcat7/webapps/minerva-big/"
]
;
then
log
"moving '/var/lib/tomcat7/webapps/minerva-big/' -> '/var/lib/
$TOMCAT_PACKAGE
/webapps/minerva-big/'"
;
mv
/var/lib/tomcat7/webapps/minerva-big/ /var/lib/
$TOMCAT_PACKAGE
/webapps/minerva-big/
chown
-R
$TOMCAT_PACKAGE
:
$TOMCAT_PACKAGE
/var/lib/
$TOMCAT_PACKAGE
/webapps/minerva-big/
fi
;;
*
)
echo
"postinst called with unknown argument
\`
$1
'"
>
&2
...
...
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