Commits · 3ee7e4c1c24a82c7472780acb81c353775c03e10 · David Hoksza / bh19-rare-diseases · GitLab

02 Dec, 2019 3 commits
- configuration cap on retrieved maps and pathways · 3ee7e4c1
  Marek Ostaszewski authored Dec 02, 2019
  
  3ee7e4c1
- qurying opentargets for variatns; fix issue with possibly missing gene name for a variant in dbsnp · a9500e72
  David Hoksza authored Dec 02, 2019
  
  a9500e72
- association README updated · 65c91a03
  David Hoksza authored Dec 02, 2019
  
  65c91a03
28 Nov, 2019 1 commit
- small description added · 7fe40d43
  Piotr Gawron authored Nov 28, 2019
  
  7fe40d43
22 Nov, 2019 5 commits
- extension of genes integrated · 1e1d7166
  David Hoksza authored Nov 22, 2019
  
  1e1d7166
- assembling into directory with disease id · e8dc2ac4
  David Hoksza authored Nov 22, 2019
  
  e8dc2ac4
- fix wrong number of reported removed snps · 8b895c49
  David Hoksza authored Nov 22, 2019
  
  8b895c49
- gene extension included and prepared for pipeline · 96764ee7
  David Hoksza authored Nov 22, 2019
  
  96764ee7
- myvariants multiple genes fix; opentargets association score in file name fix · 580ad3e7
  David Hoksza authored Nov 22, 2019
  
  580ad3e7
21 Nov, 2019 31 commits
- testing of differences in datasets goes both ways · 9c0850dc
  David Hoksza authored Nov 21, 2019
  
  9c0850dc
- newline in name of minerva variant overlay · 6d956134
  David Hoksza authored Nov 21, 2019
  
  6d956134
- assemble update · 6940442d
  David Hoksza authored Nov 21, 2019
  
  6940442d
- extending network script added · 40671fc5
  David Hoksza authored Nov 21, 2019
  
  40671fc5
- Merge branch 'master' of https://git-r3lab.uni.lu/david.hoksza/bh19-rare-diseases · a656e288
  David Hoksza authored Nov 21, 2019
  
  a656e288
- python dependencies · 3fed1bfd
  David Hoksza authored Nov 21, 2019
  
  3fed1bfd
- python dependencies · 19c2f8b9
  David Hoksza authored Nov 21, 2019
  
  19c2f8b9
- possible solution to the sed-newline issue on mac · a185ce22
  David Hoksza authored Nov 21, 2019
  
  a185ce22
- treating multiple genes per snp in clinvar · 932bc045
  David Hoksza authored Nov 21, 2019
  
  932bc045
- added name to minerva variants overlay file · 5ad7f86c
  David Hoksza authored Nov 21, 2019
  
  5ad7f86c
- fixed limiting opentargets · 00ddce56
  David Hoksza authored Nov 21, 2019
  
  00ddce56
- Merge branch 'master' of https://git-r3lab.uni.lu/david.hoksza/bh19-rare-diseases · 2368b33b
  Piotr Gawron authored Nov 21, 2019
  
  2368b33b
- next unused dependencies removed · 6b4dcfea
  Piotr Gawron authored Nov 21, 2019
  
  6b4dcfea
- Merge branch 'master' of https://git-r3lab.uni.lu/david.hoksza/bh19-rare-diseases · a68b9f99
  Enza Colonna authored Nov 21, 2019
  
  a68b9f99
- Merge branch 'master' of https://git-r3lab.uni.lu/david.hoksza/bh19-rare-diseases · a73521cd
  Piotr Gawron authored Nov 21, 2019
  
  a73521cd
- typos · 350ad7df
  Enza Colonna authored Nov 21, 2019
  
  350ad7df
- another unused dependency removed · cfcab686
  Piotr Gawron authored Nov 21, 2019
  
  cfcab686
- REPEATED COMMIT made readme for vepAllInOne.py, I know it is not the best name... · 18274535
  Enza Colonna authored Nov 21, 2019
```
REPEATED COMMIT made readme for vepAllInOne.py, I know it is not the best name ever, fell free to change it :)
```
  18274535
- typo · f683302e
  David Hoksza authored Nov 21, 2019
  
  f683302e
- Merge branch 'master' of https://git-r3lab.uni.lu/david.hoksza/bh19-rare-diseases · f4d68a7c
  David Hoksza authored Nov 21, 2019
  
  f4d68a7c
- map_generator bin · 2dd77d86
  David Hoksza authored Nov 21, 2019
  
  2dd77d86
- Merge branch 'master' of https://git-r3lab.uni.lu/david.hoksza/bh19-rare-diseases · f22b127a
  Piotr Gawron authored Nov 21, 2019
  
  f22b127a
- more logging added · 4bc48625
  Piotr Gawron authored Nov 21, 2019
  
  4bc48625
- clinvar · 675abf78
  David Hoksza authored Nov 21, 2019
  
  675abf78
- minerva and opentargets integrated · 0658937b
  David Hoksza authored Nov 21, 2019
  
  0658937b
- Merge branch 'master' of https://git-r3lab.uni.lu/david.hoksza/bh19-rare-diseases · 8ae48a32
  Piotr Gawron authored Nov 21, 2019
  
  8ae48a32
- new format of enrichr accepted · 4d193e60
  Piotr Gawron authored Nov 21, 2019
  
  4d193e60
- new format of enrichr supported · f368ab85
  Piotr Gawron authored Nov 21, 2019
  
  f368ab85
- filter logs · 19e9153a
  Piotr Gawron authored Nov 21, 2019
  
  19e9153a
- safety commit · c92fa7ce
  Enza Colonna authored Nov 21, 2019
  
  c92fa7ce
- endline fix · bfdedd0d
  Marek Ostaszewski authored Nov 21, 2019
  
  bfdedd0d