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David Hoksza
bh19-rare-diseases
Commits
df75225a
Commit
df75225a
authored
Jan 22, 2020
by
David Hoksza
Browse files
document map generator utils
parent
54a5d41b
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3
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map_generator/biohackathon/target/biohackathon-1.0-jar-with-dependencies.jar
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df75225a
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map_generator/utils/implant_annotations.py
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df75225a
"""
The purpose of this file is to enrich the annotations with UniProt identifiers because variant overlay file
has the uniprot id field which matches the individual variants to uniprot records. This is important in
situations where one gene has variants in different uniprot records (e.g. in case of multiple isoforms).
"""
import
logging
import
argparse
import
pandas
as
pd
...
...
map_generator/utils/trim_long_strings.py
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df75225a
""""
The purpose of this script is to shorten too long annotations, because the size limit in MINERVA is 256 characters.
If there exists an annotation which is longer, the import will fail.
"""
import
logging
import
argparse
import
xml.etree.ElementTree
as
ET
...
...
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