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David Hoksza
bh19-rare-diseases
Commits
d41983b9
Commit
d41983b9
authored
Dec 02, 2019
by
David Hoksza
Browse files
added parameters script file
parent
3ee7e4c1
Changes
2
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assemble.sh
View file @
d41983b9
#!/usr/bin/env bash
# ------------------------- PARAMETERS TO SET -------------------------
ORPHANET_IDS
=
"791"
#ORPHANET_IDS="130"
#ORPHANET_IDS="33,67046,79327,79321,86309"
DISGENET_CNT_THRESHOLD
=
50
DISGENET_ASSOCIATION_SCORE_THRESHOLD
=
"0"
OPENTARGETS_CNT_THRESHOLD
=
50
OPENTARGETS_ASSOCIATION_SCORE_THRESHOLD
=
"0.5"
BUILD_MAP_GENERATOR
=
0
#0 for building it
STOP_AFTER_STAGE
=
-1
source
parameters.sh
# ------------------------- PARAMETERS TO SET -------------------------
ASSOCIATIONS_DIR
=
associations/
...
...
parameters.sh
0 → 100644
View file @
d41983b9
ORPHANET_IDS
=
"130"
#ORPHANET_IDS="851,404493,46348,85295"
#ORPHANET_IDS="33,67046,79327,79321,86309"
DISGENET_CNT_THRESHOLD
=
50
DISGENET_ASSOCIATION_SCORE_THRESHOLD
=
"0"
OPENTARGETS_CNT_THRESHOLD
=
50
OPENTARGETS_ASSOCIATION_SCORE_THRESHOLD
=
"0.3"
BUILD_MAP_GENERATOR
=
0
#1 for building it
STOP_AFTER_STAGE
=
-1
\ No newline at end of file
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