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David Hoksza
bh19-rare-diseases
Commits
9c0850dc
Commit
9c0850dc
authored
Nov 21, 2019
by
David Hoksza
Browse files
testing of differences in datasets goes both ways
parent
6d956134
Changes
1
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Inline
Side-by-side
associations/merge_with_clinvar.py
View file @
9c0850dc
...
...
@@ -87,7 +87,9 @@ def contrast_clinvar(gene_variants:List[Dict], gene_variants_clinvar:Dict):
for
i
in
range
(
len
(
all_g_v
)):
name1
=
all_g_v
[
i
][
"name"
]
genes1
=
genes
[
i
]
for
j
in
range
(
i
+
1
,
len
(
all_g_v
)):
for
j
in
range
(
0
,
len
(
all_g_v
)):
if
i
==
j
:
continue
name2
=
all_g_v
[
j
][
"name"
]
genes2
=
genes
[
j
]
...
...
@@ -110,7 +112,9 @@ def contrast_clinvar(gene_variants:List[Dict], gene_variants_clinvar:Dict):
for
i
in
range
(
len
(
all_g_v
)):
name1
=
all_g_v
[
i
][
"name"
]
vars1
=
variants
[
i
]
for
j
in
range
(
i
+
1
,
len
(
all_g_v
)):
for
j
in
range
(
0
,
len
(
all_g_v
)):
if
i
==
j
:
continue
name2
=
all_g_v
[
j
][
"name"
]
vars2
=
variants
[
j
]
...
...
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