extended list

78749ab4 · David Hoksza · ab1381e0 · 78749ab4
Commit 78749ab4 authored Dec 02, 2019 by David Hoksza
--- a/assemble.sh
+++ b/assemble.sh
@@ -79,7 +79,7 @@ log "Genes stored in ${genes_out_path}"

 log "Extending genes list..."
 text_mining_out_path=${genes_out_path/03-genes/03-text-mining}
-echo Rscript --vanilla ${EXTEND_DIR}/get_extended_network.R ${genes_out_path} ${EXTEND_CONFIG}
+Rscript --vanilla ${EXTEND_DIR}/get_extended_network.R ${genes_out_path} ${EXTEND_CONFIG}
 check_exit_code
 cp ${EXTEND_DIR}/output.txt ${text_mining_out_path}
 log "Genes list extended"