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David Hoksza
bh19-rare-diseases
Commits
78749ab4
Commit
78749ab4
authored
Dec 02, 2019
by
David Hoksza
Browse files
extended list
parent
ab1381e0
Changes
1
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assemble.sh
View file @
78749ab4
...
...
@@ -79,7 +79,7 @@ log "Genes stored in ${genes_out_path}"
log
"Extending genes list..."
text_mining_out_path
=
${
genes_out_path
/03-genes/03-text-mining
}
echo
Rscript
--vanilla
${
EXTEND_DIR
}
/get_extended_network.R
${
genes_out_path
}
${
EXTEND_CONFIG
}
Rscript
--vanilla
${
EXTEND_DIR
}
/get_extended_network.R
${
genes_out_path
}
${
EXTEND_CONFIG
}
check_exit_code
cp
${
EXTEND_DIR
}
/output.txt
${
text_mining_out_path
}
log
"Genes list extended"
...
...
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