newline in name of minerva variant overlay

associations/minerva_variants.py

@@ -144,7 +144,7 @@ def get_minerva_format(db_snps: List[Dict]) -> str:
     for snp in db_snps:
         del snp['uniprot_acc']
 
-    out += "#NAME=DISEASE_ASSOCIATED_VARIANTS"
+    out += "#NAME=DISEASE_ASSOCIATED_VARIANTS\n"
     out += "#TYPE=GENETIC_VARIANT\n"
     out += "#GENOME_TYPE=UCSC\n"
     out += "#GENOME_VERSION=hg19\n"

enrichment/get_extended_network.R

@@ -40,10 +40,14 @@ if( ! (  score >= 0  & score <= 1 )) {
   stop("Invalid argument 'score'. It should be between 0 and 1")
 }
 
-required.packages <- c("biomaRt", "RCurl", "jsonlite", "httr")
+required.packages <- c("BiocManager", "RCurl", "jsonlite", "httr")
 new.packages <- required.packages[!(required.packages %in% installed.packages()[,"Package"])]
 if(length(new.packages)) install.packages(new.packages, repos='http://cran.us.r-project.org')
 
+if ("biomaRt" %in% installed.packages()[,1] == FALSE){
+    BiocManager::install("biomaRt", update=TRUE, ask=FALSE)
+}
+
 library(biomaRt)