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David Hoksza
bh19-rare-diseases
Commits
17a6ddda
Commit
17a6ddda
authored
Dec 10, 2019
by
David Hoksza
Browse files
correct handling of the text mining output in the pipeline
parent
faf33c6b
Changes
1
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assemble.sh
View file @
17a6ddda
...
...
@@ -86,7 +86,7 @@ log "Extending genes list..."
text_mining_out_path
=
${
genes_out_path
/03-genes/03-text-mining
}
Rscript
--vanilla
${
EXTEND_DIR
}
/get_extended_network.R
${
genes_out_path
}
${
EXTEND_CONFIG
}
check_exit_code
cp
${
EXTEND_DIR
}
/
output.txt
${
text_mining_out_path
}
mv
output.txt
${
text_mining_out_path
}
log
"Genes list extended"
minerva_genes_out_path
=
${
RES_DIR
}
/04-minerva-genes.txt
...
...
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