Commit 17a6ddda authored by David Hoksza's avatar David Hoksza
Browse files

correct handling of the text mining output in the pipeline

parent faf33c6b
......@@ -86,7 +86,7 @@ log "Extending genes list..."
text_mining_out_path=${genes_out_path/03-genes/03-text-mining}
Rscript --vanilla ${EXTEND_DIR}/get_extended_network.R ${genes_out_path} ${EXTEND_CONFIG}
check_exit_code
cp ${EXTEND_DIR}/output.txt ${text_mining_out_path}
mv output.txt ${text_mining_out_path}
log "Genes list extended"
minerva_genes_out_path=${RES_DIR}/04-minerva-genes.txt
......
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